Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BDNFP23560 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
BDNFP23560 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.98■□□□□ 0.31
BDNFP23560 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
BDNFP23560 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
BDNFP23560 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
BDNFP23560 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
BDNFP23560 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
BDNFP23560 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 AL035633.1-201ENST00000406139 838 ntBASIC16.98■□□□□ 0.31
BDNFP23560 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.98■□□□□ 0.31
BDNFP23560 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.98■□□□□ 0.31
BDNFP23560 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.98■□□□□ 0.31
BDNFP23560 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.98■□□□□ 0.31
BDNFP23560 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.98■□□□□ 0.31
BDNFP23560 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
BDNFP23560 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.98■□□□□ 0.31
BDNFP23560 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.98■□□□□ 0.31
BDNFP23560 MIR6069-201ENST00000620069 79 ntBASIC16.98■□□□□ 0.31
BDNFP23560 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.98■□□□□ 0.31
BDNFP23560 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
BDNFP23560 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.98■□□□□ 0.31
BDNFP23560 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.98■□□□□ 0.31
BDNFP23560 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
BDNFP23560 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.98■□□□□ 0.31
BDNFP23560 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
BDNFP23560 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
BDNFP23560 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
BDNFP23560 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.97■□□□□ 0.31
BDNFP23560 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.97■□□□□ 0.31
BDNFP23560 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
BDNFP23560 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.97■□□□□ 0.31
BDNFP23560 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
BDNFP23560 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 HAUS4P1-201ENST00000406739 1145 ntBASIC16.97■□□□□ 0.31
BDNFP23560 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.97■□□□□ 0.31
BDNFP23560 AC135586.1-201ENST00000539323 574 ntBASIC16.97■□□□□ 0.31
BDNFP23560 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
BDNFP23560 AC009118.2-201ENST00000613275 655 ntBASIC16.97■□□□□ 0.31
BDNFP23560 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.97■□□□□ 0.31
BDNFP23560 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.97■□□□□ 0.31
BDNFP23560 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.97■□□□□ 0.31
BDNFP23560 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
BDNFP23560 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
BDNFP23560 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
BDNFP23560 BNIP3P1-202ENST00000550043 1585 ntBASIC16.97■□□□□ 0.31
BDNFP23560 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.97■□□□□ 0.31
BDNFP23560 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.97■□□□□ 0.31
BDNFP23560 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BDNFP23560 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
BDNFP23560 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.96■□□□□ 0.31
BDNFP23560 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
BDNFP23560 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.96■□□□□ 0.31
BDNFP23560 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.96■□□□□ 0.31
BDNFP23560 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms