Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
COL6A1P12109 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A1P12109 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A1P12109 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17.65■□□□□ 0.42
COL6A1P12109 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.65■□□□□ 0.42
COL6A1P12109 Z93015.1-201ENST00000451718 390 ntBASIC17.65■□□□□ 0.42
COL6A1P12109 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.65■□□□□ 0.42
COL6A1P12109 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC17.65■□□□□ 0.42
COL6A1P12109 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.65■□□□□ 0.42
COL6A1P12109 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.65■□□□□ 0.42
COL6A1P12109 KC6-205ENST00000599934 556 ntTSL 4 BASIC17.65■□□□□ 0.42
COL6A1P12109 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A1P12109 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A1P12109 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC17.65■□□□□ 0.42
COL6A1P12109 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A1P12109 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A1P12109 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.65■□□□□ 0.42
COL6A1P12109 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A1P12109 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A1P12109 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A1P12109 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A1P12109 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.65■□□□□ 0.42
COL6A1P12109 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.65■□□□□ 0.42
COL6A1P12109 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
COL6A1P12109 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
COL6A1P12109 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
COL6A1P12109 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC17.64■□□□□ 0.42
COL6A1P12109 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
COL6A1P12109 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
COL6A1P12109 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
COL6A1P12109 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 AC006001.1-201ENST00000325130 474 ntBASIC17.64■□□□□ 0.41
COL6A1P12109 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC17.64■□□□□ 0.41
COL6A1P12109 FXNP2-201ENST00000411625 547 ntBASIC17.64■□□□□ 0.41
COL6A1P12109 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC17.64■□□□□ 0.41
COL6A1P12109 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A1P12109 AC022137.2-201ENST00000503482 481 ntBASIC17.64■□□□□ 0.41
COL6A1P12109 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC17.64■□□□□ 0.41
COL6A1P12109 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL6A1P12109 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A1P12109 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A1P12109 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL6A1P12109 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A1P12109 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
COL6A1P12109 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A1P12109 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
COL6A1P12109 AC005622.1-201ENST00000636801 1703 ntBASIC17.64■□□□□ 0.41
COL6A1P12109 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A1P12109 KRT8P37-201ENST00000451609 1420 ntBASIC17.64■□□□□ 0.41
COL6A1P12109 PCDHB18P-201ENST00000524813 2368 ntBASIC17.64■□□□□ 0.41
COL6A1P12109 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.63■□□□□ 0.41
COL6A1P12109 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
COL6A1P12109 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.63■□□□□ 0.41
COL6A1P12109 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
COL6A1P12109 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.63■□□□□ 0.41
COL6A1P12109 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
COL6A1P12109 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 AC007969.1-201ENST00000433675 447 ntBASIC17.63■□□□□ 0.41
COL6A1P12109 C2orf27AP3-201ENST00000434123 579 ntBASIC17.63■□□□□ 0.41
COL6A1P12109 KRT18P64-201ENST00000434946 1219 ntBASIC17.63■□□□□ 0.41
COL6A1P12109 AC004898.1-201ENST00000451057 766 ntBASIC17.63■□□□□ 0.41
COL6A1P12109 BX284668.4-201ENST00000453917 508 ntBASIC17.63■□□□□ 0.41
COL6A1P12109 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC17.63■□□□□ 0.41
COL6A1P12109 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.63■□□□□ 0.41
COL6A1P12109 AL354718.3-201ENST00000616414 581 ntBASIC17.63■□□□□ 0.41
COL6A1P12109 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.63■□□□□ 0.41
COL6A1P12109 CR382287.1-201ENST00000623954 586 ntBASIC17.63■□□□□ 0.41
COL6A1P12109 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
COL6A1P12109 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
COL6A1P12109 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms