Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 AC092474.2-201ENST00000424288 719 ntBASIC15.82■□□□□ 0.12
PCNAP12004 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC15.82■□□□□ 0.12
PCNAP12004 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.82■□□□□ 0.12
PCNAP12004 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.82■□□□□ 0.12
PCNAP12004 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.82■□□□□ 0.12
PCNAP12004 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.82■□□□□ 0.12
PCNAP12004 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.82■□□□□ 0.12
PCNAP12004 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.82■□□□□ 0.12
PCNAP12004 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
PCNAP12004 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
PCNAP12004 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.82■□□□□ 0.12
PCNAP12004 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.82■□□□□ 0.12
PCNAP12004 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
PCNAP12004 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
PCNAP12004 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.82■□□□□ 0.12
PCNAP12004 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCNAP12004 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCNAP12004 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCNAP12004 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCNAP12004 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCNAP12004 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCNAP12004 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.81■□□□□ 0.12
PCNAP12004 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCNAP12004 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCNAP12004 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PCNAP12004 AC023274.1-201ENST00000418278 595 ntBASIC15.81■□□□□ 0.12
PCNAP12004 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCNAP12004 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCNAP12004 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
PCNAP12004 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.81■□□□□ 0.12
PCNAP12004 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCNAP12004 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.81■□□□□ 0.12
PCNAP12004 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.81■□□□□ 0.12
PCNAP12004 AL078644.1-201ENST00000609881 752 ntBASIC15.81■□□□□ 0.12
PCNAP12004 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCNAP12004 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PCNAP12004 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCNAP12004 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCNAP12004 AC092384.3-202ENST00000564646 2873 ntBASIC15.81■□□□□ 0.12
PCNAP12004 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PCNAP12004 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCNAP12004 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PCNAP12004 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.8■□□□□ 0.12
PCNAP12004 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.8■□□□□ 0.12
PCNAP12004 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.8■□□□□ 0.12
PCNAP12004 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.8■□□□□ 0.12
PCNAP12004 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PCNAP12004 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.8■□□□□ 0.12
PCNAP12004 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 AL022342.1-201ENST00000400363 863 ntBASIC15.8■□□□□ 0.12
PCNAP12004 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.8■□□□□ 0.12
PCNAP12004 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PCNAP12004 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PCNAP12004 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.8■□□□□ 0.12
PCNAP12004 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.8■□□□□ 0.12
PCNAP12004 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.8■□□□□ 0.12
PCNAP12004 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PCNAP12004 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCNAP12004 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.8■□□□□ 0.12
PCNAP12004 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.8■□□□□ 0.12
PCNAP12004 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PCNAP12004 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.79■□□□□ 0.12
PCNAP12004 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.79■□□□□ 0.12
PCNAP12004 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.79■□□□□ 0.12
PCNAP12004 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.79■□□□□ 0.12
PCNAP12004 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
PCNAP12004 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms