Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CXCL1P09341 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC12.59□□□□□ -0.39
CXCL1P09341 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC12.59□□□□□ -0.39
CXCL1P09341 AL441883.1-201ENST00000566170 1045 ntBASIC12.59□□□□□ -0.39
CXCL1P09341 MIR4497-201ENST00000583208 89 ntBASIC12.59□□□□□ -0.39
CXCL1P09341 AC005332.3-201ENST00000589904 676 ntBASIC12.59□□□□□ -0.39
CXCL1P09341 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC12.59□□□□□ -0.39
CXCL1P09341 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC12.59□□□□□ -0.39
CXCL1P09341 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 VPS72-207ENST00000640458 689 ntTSL 5 BASIC12.59□□□□□ -0.39
CXCL1P09341 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 AC125634.1-201ENST00000438758 1403 ntBASIC12.59□□□□□ -0.39
CXCL1P09341 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 MROH4P-201ENST00000431302 1578 ntBASIC12.59□□□□□ -0.39
CXCL1P09341 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC12.59□□□□□ -0.39
CXCL1P09341 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
CXCL1P09341 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC12.59□□□□□ -0.39
CXCL1P09341 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 AC136759.1-202ENST00000530858 2194 ntBASIC12.59□□□□□ -0.39
CXCL1P09341 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC12.59□□□□□ -0.39
CXCL1P09341 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
CXCL1P09341 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
CXCL1P09341 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
CXCL1P09341 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.39
CXCL1P09341 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
CXCL1P09341 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.39
CXCL1P09341 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
CXCL1P09341 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
CXCL1P09341 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC12.58□□□□□ -0.4
CXCL1P09341 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC12.58□□□□□ -0.4
CXCL1P09341 STK19B-204ENST00000512515 211 ntBASIC12.58□□□□□ -0.4
CXCL1P09341 DENND3-207ENST00000518347 850 ntTSL 2 BASIC12.58□□□□□ -0.4
CXCL1P09341 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC12.58□□□□□ -0.4
CXCL1P09341 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
CXCL1P09341 AL353801.3-201ENST00000609898 542 ntBASIC12.58□□□□□ -0.4
CXCL1P09341 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC12.58□□□□□ -0.4
CXCL1P09341 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
CXCL1P09341 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC12.58□□□□□ -0.4
CXCL1P09341 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC12.58□□□□□ -0.4
CXCL1P09341 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
CXCL1P09341 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
CXCL1P09341 AC112693.3-201ENST00000624819 1983 ntBASIC12.58□□□□□ -0.4
CXCL1P09341 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CXCL1P09341 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CXCL1P09341 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CXCL1P09341 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC12.57□□□□□ -0.4
CXCL1P09341 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CXCL1P09341 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
CXCL1P09341 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC12.57□□□□□ -0.4
CXCL1P09341 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC12.57□□□□□ -0.4
CXCL1P09341 ZEB1-AS1-208ENST00000607166 2503 ntBASIC12.57□□□□□ -0.4
CXCL1P09341 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CXCL1P09341 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
CXCL1P09341 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
CXCL1P09341 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
CXCL1P09341 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CXCL1P09341 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
CXCL1P09341 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC12.57□□□□□ -0.4
CXCL1P09341 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
CXCL1P09341 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CXCL1P09341 KRT8P10-201ENST00000450021 1447 ntBASIC12.57□□□□□ -0.4
CXCL1P09341 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC12.57□□□□□ -0.4
CXCL1P09341 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CXCL1P09341 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CXCL1P09341 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms