Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC13.62□□□□□ -0.23
CD74P04233 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.62□□□□□ -0.23
CD74P04233 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC13.62□□□□□ -0.23
CD74P04233 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC13.62□□□□□ -0.23
CD74P04233 LINC00265-3P-201ENST00000447588 903 ntBASIC13.62□□□□□ -0.23
CD74P04233 AC106795.1-205ENST00000512851 1056 ntBASIC13.62□□□□□ -0.23
CD74P04233 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.62□□□□□ -0.23
CD74P04233 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC13.62□□□□□ -0.23
CD74P04233 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC13.62□□□□□ -0.23
CD74P04233 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
CD74P04233 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
CD74P04233 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
CD74P04233 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
CD74P04233 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.62□□□□□ -0.23
CD74P04233 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.62□□□□□ -0.23
CD74P04233 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CD74P04233 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 LINC00552-201ENST00000625151 2579 ntBASIC13.62□□□□□ -0.23
CD74P04233 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.62□□□□□ -0.23
CD74P04233 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC13.62□□□□□ -0.23
CD74P04233 MROH4P-201ENST00000431302 1578 ntBASIC13.62□□□□□ -0.23
CD74P04233 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC13.62□□□□□ -0.23
CD74P04233 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CD74P04233 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
CD74P04233 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CD74P04233 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.61□□□□□ -0.23
CD74P04233 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC13.61□□□□□ -0.23
CD74P04233 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC13.61□□□□□ -0.23
CD74P04233 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 AC092127.1-201ENST00000567093 3455 ntBASIC13.61□□□□□ -0.23
CD74P04233 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CD74P04233 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC13.61□□□□□ -0.23
CD74P04233 AC126365.1-201ENST00000578585 1514 ntBASIC13.61□□□□□ -0.23
CD74P04233 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC13.61□□□□□ -0.23
CD74P04233 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.61□□□□□ -0.23
CD74P04233 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC13.61□□□□□ -0.23
CD74P04233 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC13.61□□□□□ -0.23
CD74P04233 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC13.61□□□□□ -0.23
CD74P04233 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
CD74P04233 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC13.61□□□□□ -0.23
CD74P04233 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC13.61□□□□□ -0.23
CD74P04233 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC13.61□□□□□ -0.23
CD74P04233 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC13.61□□□□□ -0.23
CD74P04233 PTK2-216ENST00000519881 863 ntTSL 3 BASIC13.61□□□□□ -0.23
CD74P04233 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC13.61□□□□□ -0.23
CD74P04233 MPI-205ENST00000562606 1052 ntTSL 3 BASIC13.61□□□□□ -0.23
CD74P04233 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
CD74P04233 AP002414.4-201ENST00000589764 1148 ntBASIC13.61□□□□□ -0.23
CD74P04233 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC13.61□□□□□ -0.23
CD74P04233 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC13.61□□□□□ -0.23
CD74P04233 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC13.61□□□□□ -0.23
CD74P04233 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
CD74P04233 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.61□□□□□ -0.23
CD74P04233 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 CELP-203ENST00000624767 2414 ntTSL 5 BASIC13.61□□□□□ -0.23
CD74P04233 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CD74P04233 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms