Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTDNEP1O95476 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.64■□□□□ 0.58
CTDNEP1O95476 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CTDNEP1O95476 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.64■□□□□ 0.58
CTDNEP1O95476 BANP-201ENST00000286122 2368 ntTSL 5 BASIC18.64■□□□□ 0.58
CTDNEP1O95476 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CTDNEP1O95476 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CTDNEP1O95476 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CTDNEP1O95476 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CTDNEP1O95476 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC18.64■□□□□ 0.58
CTDNEP1O95476 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTDNEP1O95476 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTDNEP1O95476 AC144831.1-201ENST00000573312 2656 ntBASIC18.64■□□□□ 0.57
CTDNEP1O95476 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTDNEP1O95476 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CTDNEP1O95476 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTDNEP1O95476 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 KRT18P32-201ENST00000424695 1287 ntBASIC18.64■□□□□ 0.57
CTDNEP1O95476 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 AP000344.2-201ENST00000512987 629 ntBASIC18.64■□□□□ 0.57
CTDNEP1O95476 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTDNEP1O95476 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTDNEP1O95476 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTDNEP1O95476 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTDNEP1O95476 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTDNEP1O95476 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTDNEP1O95476 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTDNEP1O95476 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 AC105250.1-201ENST00000509378 2057 ntBASIC18.64■□□□□ 0.57
CTDNEP1O95476 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.64■□□□□ 0.57
CTDNEP1O95476 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTDNEP1O95476 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 AL139010.1-201ENST00000454878 894 ntBASIC18.63■□□□□ 0.57
CTDNEP1O95476 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 MIR3687-2-201ENST00000577708 61 ntBASIC18.63■□□□□ 0.57
CTDNEP1O95476 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 MIR3687-1-201ENST00000614492 61 ntBASIC18.63■□□□□ 0.57
CTDNEP1O95476 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTDNEP1O95476 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.63■□□□□ 0.57
CTDNEP1O95476 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDNEP1O95476 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDNEP1O95476 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDNEP1O95476 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDNEP1O95476 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDNEP1O95476 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDNEP1O95476 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTDNEP1O95476 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDNEP1O95476 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms