Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 DENND4C-205ENST00000434457 6718 ntTSL 5 BASIC12.12□□□□□ -0.474e-6■■■■■ 105.4
SF3B1O75533 SMYD3-218ENST00000630181 1458 ntTSL 2 BASIC8.49□□□□□ -1.052e-6■■■■■ 105.4
SF3B1O75533 TCF4-259ENST00000627568 806 ntTSL 528.24■■■□□ 2.111e-8■■■■■ 105.3
SF3B1O75533 PLEC-214ENST00000528131 564 ntTSL 320.56■□□□□ 0.882e-6■■■■■ 105.3
SF3B1O75533 HECTD4-202ENST00000377560 15759 ntAPPRIS P5 TSL 5 BASIC11.34□□□□□ -0.593e-6■■■■■ 105.3
SF3B1O75533 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.43e-6■■■■■ 105.3
SF3B1O75533 SMYD3-206ENST00000455277 566 ntTSL 59.88□□□□□ -0.833e-6■■■■■ 105.3
SF3B1O75533 CBX7-203ENST00000434260 472 ntTSL 320.64■□□□□ 0.895e-7■■■■■ 105.3
SF3B1O75533 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.485e-7■■■■■ 105.3
SF3B1O75533 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.68■□□□□ 0.425e-7■■■■■ 105.3
SF3B1O75533 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.135e-7■■■■■ 105.3
SF3B1O75533 DLEU1-226ENST00000484606 400 ntTSL 512.37□□□□□ -0.435e-7■■■■■ 105.3
SF3B1O75533 SNRNP200-201ENST00000323853 7165 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.652e-6■■■■■ 105.3
SF3B1O75533 CBX7-204ENST00000475962 451 ntTSL 37.18□□□□□ -1.265e-7■■■■■ 105.3
SF3B1O75533 CTBP1-211ENST00000511907 900 ntTSL 321.25■□□□□ 0.991e-7■■■■■ 105.3
SF3B1O75533 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.19■□□□□ 0.022e-6■■■■■ 105.3
SF3B1O75533 CUL5-201ENST00000393094 6351 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.562e-6■■■■■ 105.3
SF3B1O75533 WWP2-203ENST00000544162 2723 ntTSL 211.31□□□□□ -0.62e-6■■■■■ 105.3
SF3B1O75533 BST2-203ENST00000533098 459 ntTSL 210.58□□□□□ -0.722e-6■■■■■ 105.3
SF3B1O75533 CUL5-203ENST00000531427 3596 ntTSL 1 (best)7.6□□□□□ -1.192e-6■■■■■ 105.3
SF3B1O75533 PIP4K2A-207ENST00000604912 443 ntTSL 26.09□□□□□ -1.432e-6■■■■■ 105.3
SF3B1O75533 WWP2-211ENST00000567986 547 ntTSL 45.68□□□□□ -1.52e-6■■■■■ 105.3
SF3B1O75533 GSTCD-204ENST00000484843 2228 ntTSL 215.74■□□□□ 0.114e-6■■■■■ 105.2
SF3B1O75533 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.46■□□□□ 0.064e-6■■■■■ 105.2
SF3B1O75533 LMBR1-212ENST00000448926 3629 ntTSL 24.21□□□□□ -1.743e-6■■■■■ 105.2
SF3B1O75533 HDAC8-216ENST00000470998 329 ntTSL 35.89□□□□□ -1.472e-6■■■■■ 105.2
SF3B1O75533 SMYD3-212ENST00000483072 466 ntTSL 29.49□□□□□ -0.892e-7■■■■■ 105.2
SF3B1O75533 ACVR2B-203ENST00000465020 1666 ntTSL 219.08■□□□□ 0.654e-9■■■■■ 105.2
SF3B1O75533 ACVR2B-201ENST00000352511 11821 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.644e-9■■■■■ 105.2
SF3B1O75533 RHOQ-202ENST00000432183 714 ntTSL 533.62■■■□□ 2.974e-6■■■■■ 105.2
SF3B1O75533 TSEN34-206ENST00000456872 853 ntTSL 227.16■■□□□ 1.944e-6■■■■■ 105.2
SF3B1O75533 TSEN34-205ENST00000455798 956 ntTSL 226.95■■□□□ 1.914e-6■■■■■ 105.2
SF3B1O75533 MOB2-207ENST00000614710 705 ntTSL 5 BASIC26.9■■□□□ 1.97e-6■■■■■ 105.2
SF3B1O75533 AKT2-203ENST00000391844 1795 ntTSL 1 (best)26.25■■□□□ 1.794e-6■■■■■ 105.2
SF3B1O75533 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.39■■□□□ 1.664e-6■■■■■ 105.2
SF3B1O75533 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.624e-6■■■■■ 105.2
SF3B1O75533 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.454e-6■■■■■ 105.2
SF3B1O75533 CERK-202ENST00000443629 1760 ntTSL 1 (best)23.4■■□□□ 1.344e-6■■■■■ 105.2
SF3B1O75533 TSEN34-207ENST00000496583 2372 ntTSL 223.12■■□□□ 1.294e-6■■■■■ 105.2
SF3B1O75533 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.257e-6■■■■■ 105.2
SF3B1O75533 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC22.13■■□□□ 1.134e-6■■■■■ 105.2
SF3B1O75533 MOB2-203ENST00000526698 608 ntTSL 322.11■■□□□ 1.137e-6■■■■■ 105.2
SF3B1O75533 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.894e-6■■■■■ 105.2
SF3B1O75533 AKT2-240ENST00000584288 1706 ntTSL 220.46■□□□□ 0.874e-6■■■■■ 105.2
SF3B1O75533 RHOQ-205ENST00000482449 674 ntTSL 218.94■□□□□ 0.624e-6■■■■■ 105.2
SF3B1O75533 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.44e-6■■■■■ 105.2
SF3B1O75533 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.65■□□□□ 0.267e-6■■■■■ 105.2
SF3B1O75533 EIF3D-207ENST00000457241 729 ntTSL 216.41■□□□□ 0.224e-6■■■■■ 105.2
SF3B1O75533 SEC14L1-216ENST00000587820 652 ntTSL 316.33■□□□□ 0.27e-6■■■■■ 105.2
SF3B1O75533 MOB2-202ENST00000526462 795 ntTSL 213.89□□□□□ -0.197e-6■■■■■ 105.2
SF3B1O75533 TSC2-216ENST00000497886 3248 ntTSL 213.84□□□□□ -0.194e-6■■■■■ 105.2
SF3B1O75533 FAM117A-212ENST00000515240 624 ntTSL 413.5□□□□□ -0.254e-6■■■■■ 105.2
SF3B1O75533 LONP2-202ENST00000416006 2056 ntTSL 213.43□□□□□ -0.262e-6■■■■■ 105.2
SF3B1O75533 LONP2-208ENST00000566755 2514 ntTSL 513.11□□□□□ -0.312e-6■■■■■ 105.2
SF3B1O75533 LONP2-203ENST00000535754 2580 ntTSL 1 (best) BASIC12.78□□□□□ -0.362e-6■■■■■ 105.2
SF3B1O75533 NOL10-201ENST00000345985 3333 ntTSL 2 BASIC12.64□□□□□ -0.395e-6■■■■■ 105.2
SF3B1O75533 NOL10-205ENST00000538384 3418 ntTSL 2 BASIC12.33□□□□□ -0.445e-6■■■■■ 105.2
SF3B1O75533 LONP2-201ENST00000285737 8199 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.622e-6■■■■■ 105.2
SF3B1O75533 HOXB6-204ENST00000490419 468 ntTSL 311.09□□□□□ -0.634e-6■■■■■ 105.2
SF3B1O75533 EIF3D-206ENST00000455547 996 ntTSL 510.83□□□□□ -0.684e-6■■■■■ 105.2
SF3B1O75533 FAM117A-211ENST00000514841 480 ntTSL 410.74□□□□□ -0.694e-6■■■■■ 105.2
SF3B1O75533 FAM162A-203ENST00000477892 3052 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.77e-6■■■■■ 105.2
SF3B1O75533 EMC3-AS1-201ENST00000326237 2882 ntTSL 210.56□□□□□ -0.724e-6■■■■■ 105.2
SF3B1O75533 XRCC2-201ENST00000359321 3067 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.84e-6■■■■■ 105.2
SF3B1O75533 RHOQ-207ENST00000489471 869 ntTSL 59.86□□□□□ -0.834e-6■■■■■ 105.2
SF3B1O75533 NOL10-202ENST00000381685 2589 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.865e-6■■■■■ 105.2
SF3B1O75533 RHOQ-203ENST00000465198 318 ntTSL 39.48□□□□□ -0.894e-6■■■■■ 105.2
SF3B1O75533 SEC14L1-214ENST00000586429 575 ntTSL 58.94□□□□□ -0.987e-6■■■■■ 105.2
SF3B1O75533 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC7.72□□□□□ -1.174e-6■■■■■ 105.2
SF3B1O75533 SEC14L1-213ENST00000586390 566 ntTSL 47.45□□□□□ -1.227e-6■■■■■ 105.2
SF3B1O75533 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC6.68□□□□□ -1.347e-6■■■■■ 105.2
SF3B1O75533 ANK3-229ENST00000617800 545 ntTSL 56.51□□□□□ -1.377e-6■■■■■ 105.2
SF3B1O75533 ANK3-215ENST00000502769 657 ntTSL 36.51□□□□□ -1.377e-6■■■■■ 105.2
SF3B1O75533 ANK3-226ENST00000612776 681 ntTSL 36.46□□□□□ -1.387e-6■■■■■ 105.2
SF3B1O75533 ANK3-224ENST00000610321 4930 ntTSL 56.37□□□□□ -1.397e-6■■■■■ 105.2
SF3B1O75533 ANK3-204ENST00000373820 2358 ntTSL 26.2□□□□□ -1.427e-6■■■■■ 105.2
SF3B1O75533 RHOQ-204ENST00000473428 757 ntTSL 36.07□□□□□ -1.444e-6■■■■■ 105.2
SF3B1O75533 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.83□□□□□ -1.647e-6■■■■■ 105.2
SF3B1O75533 ANK3-228ENST00000616444 2939 ntTSL 54.39□□□□□ -1.717e-6■■■■■ 105.2
SF3B1O75533 ANK3-212ENST00000480699 489 ntTSL 33.36□□□□□ -1.877e-6■■■■■ 105.2
SF3B1O75533 LINC01169-201ENST00000558797 833 ntTSL 1 (best) BASIC11.37□□□□□ -0.593e-6■■■■■ 105.1
SF3B1O75533 TXNRD2-221ENST00000635155 858 ntTSL 515.29■□□□□ 0.045e-6■■■■■ 105.1
SF3B1O75533 WIPF2-203ENST00000494757 2113 ntTSL 1 (best)22.25■■□□□ 1.154e-8■■■■■ 105
SF3B1O75533 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.894e-8■■■■■ 105
SF3B1O75533 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.494e-8■■■■■ 105
SF3B1O75533 WIPF2-206ENST00000582781 3163 ntTSL 1 (best)15.97■□□□□ 0.154e-8■■■■■ 105
SF3B1O75533 WIPF2-201ENST00000323571 7474 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.674e-8■■■■■ 105
SF3B1O75533 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.5■□□□□ 0.391e-6■■■■■ 105
SF3B1O75533 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.391e-6■■■■■ 105
SF3B1O75533 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.21e-6■■■■■ 105
SF3B1O75533 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.926e-6■■■■■ 105
SF3B1O75533 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.232e-6■■■■■ 104.9
SF3B1O75533 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.377e-6■■■■■ 104.9
SF3B1O75533 AGAP3-209ENST00000469901 582 ntTSL 321.84■■□□□ 1.091e-6■■■■■ 104.9
SF3B1O75533 AGAP3-214ENST00000476375 1019 ntTSL 514.18□□□□□ -0.141e-6■■■■■ 104.9
SF3B1O75533 IMPDH2-212ENST00000496837 760 ntTSL 216.44■□□□□ 0.221e-7■■■■■ 104.9
SF3B1O75533 IMPDH2-210ENST00000485500 852 ntTSL 312.47□□□□□ -0.411e-7■■■■■ 104.9
SF3B1O75533 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 18e-7■■■■■ 104.8
SF3B1O75533 UGP2-208ENST00000467999 747 ntTSL 518.81■□□□□ 0.68e-7■■■■■ 104.8
SF3B1O75533 UGP2-221ENST00000488245 784 ntTSL 516.76■□□□□ 0.278e-7■■■■■ 104.8
Retrieved 100 of 46,956 protein–RNA pairs in 1886.4 ms