Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.91■□□□□ 0.14
VPS4BO75351 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.91■□□□□ 0.14
VPS4BO75351 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
VPS4BO75351 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
VPS4BO75351 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.91■□□□□ 0.14
VPS4BO75351 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 AC103702.1-201ENST00000548801 2630 ntBASIC15.91■□□□□ 0.14
VPS4BO75351 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.91■□□□□ 0.14
VPS4BO75351 TSPY26P-202ENST00000565928 3884 ntBASIC15.91■□□□□ 0.14
VPS4BO75351 U82695.1-201ENST00000635752 1889 ntBASIC15.91■□□□□ 0.14
VPS4BO75351 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.9■□□□□ 0.14
VPS4BO75351 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VPS4BO75351 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.9■□□□□ 0.14
VPS4BO75351 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS4BO75351 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.9■□□□□ 0.14
VPS4BO75351 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS4BO75351 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS4BO75351 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
VPS4BO75351 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VPS4BO75351 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.9■□□□□ 0.14
VPS4BO75351 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS4BO75351 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VPS4BO75351 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS4BO75351 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.9■□□□□ 0.14
VPS4BO75351 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.9■□□□□ 0.14
VPS4BO75351 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VPS4BO75351 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.9■□□□□ 0.14
VPS4BO75351 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.9■□□□□ 0.14
VPS4BO75351 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.9■□□□□ 0.14
VPS4BO75351 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.9■□□□□ 0.14
VPS4BO75351 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
VPS4BO75351 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.9■□□□□ 0.14
VPS4BO75351 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.9■□□□□ 0.14
VPS4BO75351 AC027612.4-201ENST00000605371 583 ntBASIC15.9■□□□□ 0.14
VPS4BO75351 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.9■□□□□ 0.14
VPS4BO75351 AC093512.1-201ENST00000617969 520 ntBASIC15.9■□□□□ 0.14
VPS4BO75351 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS4BO75351 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.9■□□□□ 0.14
VPS4BO75351 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VPS4BO75351 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS4BO75351 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.9■□□□□ 0.14
VPS4BO75351 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS4BO75351 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
VPS4BO75351 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.9■□□□□ 0.14
VPS4BO75351 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS4BO75351 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS4BO75351 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS4BO75351 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
VPS4BO75351 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS4BO75351 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS4BO75351 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS4BO75351 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS4BO75351 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS4BO75351 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS4BO75351 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS4BO75351 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS4BO75351 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS4BO75351 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS4BO75351 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.89■□□□□ 0.13
VPS4BO75351 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.89■□□□□ 0.13
VPS4BO75351 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS4BO75351 HCG4B-203ENST00000450128 991 ntBASIC15.89■□□□□ 0.13
VPS4BO75351 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
VPS4BO75351 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS4BO75351 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.89■□□□□ 0.13
VPS4BO75351 AC025678.2-201ENST00000562061 970 ntBASIC15.89■□□□□ 0.13
VPS4BO75351 AC004835.2-201ENST00000603762 682 ntBASIC15.89■□□□□ 0.13
VPS4BO75351 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS4BO75351 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS4BO75351 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
VPS4BO75351 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS4BO75351 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS4BO75351 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
VPS4BO75351 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS4BO75351 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS4BO75351 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
VPS4BO75351 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS4BO75351 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS4BO75351 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS4BO75351 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS4BO75351 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS4BO75351 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS4BO75351 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.88■□□□□ 0.13
VPS4BO75351 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.88■□□□□ 0.13
VPS4BO75351 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
VPS4BO75351 NORAD-201ENST00000565493 5339 ntBASIC15.88■□□□□ 0.13
VPS4BO75351 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS4BO75351 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms