Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.25□□□□□ -0.13
LMX1BO60663 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.25□□□□□ -0.13
LMX1BO60663 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
LMX1BO60663 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 AC073347.1-201ENST00000421633 2643 ntBASIC14.25□□□□□ -0.13
LMX1BO60663 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC14.25□□□□□ -0.13
LMX1BO60663 HMGA1P7-201ENST00000406908 502 ntBASIC14.25□□□□□ -0.13
LMX1BO60663 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC14.25□□□□□ -0.13
LMX1BO60663 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC14.25□□□□□ -0.13
LMX1BO60663 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 AC025678.2-201ENST00000562061 970 ntBASIC14.25□□□□□ -0.13
LMX1BO60663 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.25□□□□□ -0.13
LMX1BO60663 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC14.25□□□□□ -0.13
LMX1BO60663 CITED2-204ENST00000618718 901 ntTSL 2 BASIC14.25□□□□□ -0.13
LMX1BO60663 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
LMX1BO60663 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
LMX1BO60663 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
LMX1BO60663 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.25□□□□□ -0.13
LMX1BO60663 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.25□□□□□ -0.13
LMX1BO60663 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
LMX1BO60663 AL592424.1-201ENST00000563624 1536 ntBASIC14.25□□□□□ -0.13
LMX1BO60663 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
LMX1BO60663 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
LMX1BO60663 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.24□□□□□ -0.13
LMX1BO60663 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.24□□□□□ -0.13
LMX1BO60663 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.24□□□□□ -0.13
LMX1BO60663 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
LMX1BO60663 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.24□□□□□ -0.13
LMX1BO60663 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.24□□□□□ -0.13
LMX1BO60663 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.24□□□□□ -0.13
LMX1BO60663 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.24□□□□□ -0.13
LMX1BO60663 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 AL035633.1-201ENST00000406139 838 ntBASIC14.24□□□□□ -0.13
LMX1BO60663 FAM185BP-201ENST00000443595 716 ntBASIC14.24□□□□□ -0.13
LMX1BO60663 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.24□□□□□ -0.13
LMX1BO60663 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.24□□□□□ -0.13
LMX1BO60663 AL096865.1-201ENST00000606796 927 ntBASIC14.24□□□□□ -0.13
LMX1BO60663 AC093512.1-201ENST00000617969 520 ntBASIC14.24□□□□□ -0.13
LMX1BO60663 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.24□□□□□ -0.13
LMX1BO60663 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
LMX1BO60663 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
LMX1BO60663 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.24□□□□□ -0.13
LMX1BO60663 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.24□□□□□ -0.13
LMX1BO60663 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
LMX1BO60663 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.24□□□□□ -0.13
LMX1BO60663 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.24□□□□□ -0.13
LMX1BO60663 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.24□□□□□ -0.13
LMX1BO60663 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LMX1BO60663 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
LMX1BO60663 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.23□□□□□ -0.13
LMX1BO60663 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.23□□□□□ -0.13
LMX1BO60663 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.23□□□□□ -0.13
LMX1BO60663 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC14.23□□□□□ -0.13
LMX1BO60663 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.23□□□□□ -0.13
LMX1BO60663 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
LMX1BO60663 STOM-202ENST00000347359 870 ntTSL 2 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms