Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXN3O00409 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXN3O00409 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
FOXN3O00409 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXN3O00409 AL691432.1-201ENST00000596308 1422 ntBASIC17.3■□□□□ 0.36
FOXN3O00409 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXN3O00409 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXN3O00409 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
FOXN3O00409 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.29■□□□□ 0.36
FOXN3O00409 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXN3O00409 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
FOXN3O00409 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
FOXN3O00409 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
FOXN3O00409 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
FOXN3O00409 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.29■□□□□ 0.36
FOXN3O00409 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.29■□□□□ 0.36
FOXN3O00409 AL592309.1-201ENST00000443127 649 ntBASIC17.29■□□□□ 0.36
FOXN3O00409 CEND1P1-201ENST00000451006 455 ntBASIC17.29■□□□□ 0.36
FOXN3O00409 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.29■□□□□ 0.36
FOXN3O00409 AC069335.1-201ENST00000489972 472 ntBASIC17.29■□□□□ 0.36
FOXN3O00409 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.29■□□□□ 0.36
FOXN3O00409 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
FOXN3O00409 IGHV3-62-201ENST00000520057 340 ntBASIC17.29■□□□□ 0.36
FOXN3O00409 KRT8P23-201ENST00000560090 1207 ntBASIC17.29■□□□□ 0.36
FOXN3O00409 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.29■□□□□ 0.36
FOXN3O00409 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.29■□□□□ 0.36
FOXN3O00409 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.29■□□□□ 0.36
FOXN3O00409 AC105339.1-204ENST00000636249 355 ntBASIC17.29■□□□□ 0.36
FOXN3O00409 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXN3O00409 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXN3O00409 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXN3O00409 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXN3O00409 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXN3O00409 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.29■□□□□ 0.36
FOXN3O00409 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.29■□□□□ 0.36
FOXN3O00409 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXN3O00409 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.29■□□□□ 0.36
FOXN3O00409 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
FOXN3O00409 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXN3O00409 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
FOXN3O00409 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXN3O00409 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
FOXN3O00409 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.28■□□□□ 0.36
FOXN3O00409 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
FOXN3O00409 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 UXT-AS1-201ENST00000590504 1525 ntBASIC17.28■□□□□ 0.36
FOXN3O00409 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
FOXN3O00409 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
FOXN3O00409 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.28■□□□□ 0.36
FOXN3O00409 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.28■□□□□ 0.36
FOXN3O00409 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.28■□□□□ 0.36
FOXN3O00409 RNA5SP410-201ENST00000516285 106 ntBASIC17.28■□□□□ 0.36
FOXN3O00409 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.28■□□□□ 0.36
FOXN3O00409 SLC25A39P2-201ENST00000537614 270 ntBASIC17.28■□□□□ 0.36
FOXN3O00409 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.28■□□□□ 0.36
FOXN3O00409 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
FOXN3O00409 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.28■□□□□ 0.36
FOXN3O00409 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.28■□□□□ 0.36
FOXN3O00409 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.28■□□□□ 0.36
FOXN3O00409 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
FOXN3O00409 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.28■□□□□ 0.36
FOXN3O00409 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXN3O00409 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXN3O00409 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
FOXN3O00409 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
FOXN3O00409 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXN3O00409 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
FOXN3O00409 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
FOXN3O00409 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.27■□□□□ 0.36
FOXN3O00409 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXN3O00409 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXN3O00409 LINC00554-201ENST00000564841 3011 ntBASIC17.27■□□□□ 0.36
FOXN3O00409 LRRFIP1P1-201ENST00000498774 2246 ntBASIC17.27■□□□□ 0.36
FOXN3O00409 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.27■□□□□ 0.36
FOXN3O00409 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXN3O00409 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXN3O00409 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXN3O00409 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.27■□□□□ 0.36
FOXN3O00409 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.27■□□□□ 0.36
FOXN3O00409 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.27■□□□□ 0.36
FOXN3O00409 AC112482.1-201ENST00000492080 688 ntBASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms