Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 AC092919.2-201ENST00000623631 1645 ntBASIC13.12□□□□□ -0.31
FOXA2Q9Y261 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 AC016027.1-202ENST00000607927 1699 ntBASIC13.12□□□□□ -0.31
FOXA2Q9Y261 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 AC004832.2-201ENST00000426397 482 ntBASIC13.11□□□□□ -0.31
FOXA2Q9Y261 AC140658.5-201ENST00000438532 169 ntBASIC13.11□□□□□ -0.31
FOXA2Q9Y261 DNAJB3-201ENST00000446806 729 ntBASIC13.11□□□□□ -0.31
FOXA2Q9Y261 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 THTPA-204ENST00000554970 569 ntTSL 4 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 THTPA-206ENST00000556015 535 ntTSL 3 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 AC092865.6-201ENST00000642101 219 ntBASIC13.11□□□□□ -0.31
FOXA2Q9Y261 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 FES-204ENST00000414248 2327 ntTSL 2 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
FOXA2Q9Y261 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 NEK7-201ENST00000367383 586 ntTSL 2 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 AC002056.1-201ENST00000395613 760 ntBASIC13.1□□□□□ -0.31
FOXA2Q9Y261 PMP22-202ENST00000395936 816 ntTSL 3 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 AC112191.1-201ENST00000523689 701 ntBASIC13.1□□□□□ -0.31
FOXA2Q9Y261 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 CALM1-205ENST00000553542 877 ntTSL 5 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 COX5A-206ENST00000568783 571 ntTSL 3 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 MTDHP5-201ENST00000598980 586 ntBASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms