Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.8■□□□□ 0.28
AP4E1Q9UPM8 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
AP4E1Q9UPM8 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP4E1Q9UPM8 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP4E1Q9UPM8 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
AP4E1Q9UPM8 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.8■□□□□ 0.28
AP4E1Q9UPM8 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP4E1Q9UPM8 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP4E1Q9UPM8 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP4E1Q9UPM8 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
AP4E1Q9UPM8 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
AP4E1Q9UPM8 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP4E1Q9UPM8 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.8■□□□□ 0.28
AP4E1Q9UPM8 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.8■□□□□ 0.28
AP4E1Q9UPM8 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 FAM58DP-201ENST00000428076 619 ntBASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 AC004835.2-201ENST00000603762 682 ntBASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 AP3S2-216ENST00000617003 1561 ntBASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.79■□□□□ 0.28
AP4E1Q9UPM8 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 RARRES2P9-201ENST00000565168 469 ntBASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 AC134684.3-201ENST00000641758 218 ntBASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
AP4E1Q9UPM8 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms