Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 HYMAI-201ENST00000635591 3347 ntBASIC17.3■□□□□ 0.36
SIX2Q9NPC8 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 FAM58DP-201ENST00000428076 619 ntBASIC17.3■□□□□ 0.36
SIX2Q9NPC8 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.3■□□□□ 0.36
SIX2Q9NPC8 IGHV3-62-201ENST00000520057 340 ntBASIC17.3■□□□□ 0.36
SIX2Q9NPC8 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 MIR4313-201ENST00000580760 101 ntBASIC17.3■□□□□ 0.36
SIX2Q9NPC8 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 UXT-AS1-201ENST00000590504 1525 ntBASIC17.3■□□□□ 0.36
SIX2Q9NPC8 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX2Q9NPC8 REXO1L1P-202ENST00000608646 1974 ntBASIC17.29■□□□□ 0.36
SIX2Q9NPC8 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 CYP4F24P-201ENST00000586049 1580 ntBASIC17.29■□□□□ 0.36
SIX2Q9NPC8 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 AC004987.2-201ENST00000395959 1148 ntBASIC17.29■□□□□ 0.36
SIX2Q9NPC8 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 CEND1P1-201ENST00000451006 455 ntBASIC17.29■□□□□ 0.36
SIX2Q9NPC8 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 AC005829.1-201ENST00000570002 483 ntBASIC17.29■□□□□ 0.36
SIX2Q9NPC8 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 AL513210.1-201ENST00000629608 234 ntBASIC17.29■□□□□ 0.36
SIX2Q9NPC8 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 AC144831.1-201ENST00000573312 2656 ntBASIC17.29■□□□□ 0.36
SIX2Q9NPC8 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX2Q9NPC8 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 AC105250.1-201ENST00000509378 2057 ntBASIC17.28■□□□□ 0.36
SIX2Q9NPC8 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 AC009090.5-201ENST00000624886 2285 ntBASIC17.28■□□□□ 0.36
SIX2Q9NPC8 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 EEF1DP4-201ENST00000446006 880 ntBASIC17.28■□□□□ 0.36
SIX2Q9NPC8 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms