Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 AP001005.1-201ENST00000571755 1248 ntBASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TRIM56Q9BRZ2 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 AC069224.1-201ENST00000566372 1715 ntBASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 AL592424.1-201ENST00000563624 1536 ntBASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 AP005117.1-202ENST00000581724 1908 ntBASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM56Q9BRZ2 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 AL031432.2-201ENST00000566714 459 ntBASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 AC018845.2-201ENST00000568326 409 ntBASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 AL928711.1-201ENST00000570165 459 ntBASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRIM56Q9BRZ2 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms