Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC13.87□□□□□ -0.19
COL12A1Q99715 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
COL12A1Q99715 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC13.87□□□□□ -0.19
COL12A1Q99715 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL12A1Q99715 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL12A1Q99715 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL12A1Q99715 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL12A1Q99715 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL12A1Q99715 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL12A1Q99715 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.87□□□□□ -0.19
COL12A1Q99715 AZGP1P1-201ENST00000411909 902 ntBASIC13.87□□□□□ -0.19
COL12A1Q99715 TOMM22P5-201ENST00000416399 439 ntBASIC13.87□□□□□ -0.19
COL12A1Q99715 FAM197Y7-201ENST00000432892 766 ntBASIC13.87□□□□□ -0.19
COL12A1Q99715 HOMER2P2-201ENST00000451621 847 ntBASIC13.87□□□□□ -0.19
COL12A1Q99715 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.87□□□□□ -0.19
COL12A1Q99715 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC13.87□□□□□ -0.19
COL12A1Q99715 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL12A1Q99715 AMT-206ENST00000458307 1860 ntTSL 2 BASIC13.87□□□□□ -0.19
COL12A1Q99715 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
COL12A1Q99715 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC13.87□□□□□ -0.19
COL12A1Q99715 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL12A1Q99715 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
COL12A1Q99715 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL12A1Q99715 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC13.87□□□□□ -0.19
COL12A1Q99715 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC13.87□□□□□ -0.19
COL12A1Q99715 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL12A1Q99715 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC13.87□□□□□ -0.19
COL12A1Q99715 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL12A1Q99715 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL12A1Q99715 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
COL12A1Q99715 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL12A1Q99715 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC13.87□□□□□ -0.19
COL12A1Q99715 AC022217.1-201ENST00000521069 738 ntBASIC13.87□□□□□ -0.19
COL12A1Q99715 NPM1P43-201ENST00000558669 786 ntBASIC13.87□□□□□ -0.19
COL12A1Q99715 AC009486.1-201ENST00000569860 813 ntBASIC13.87□□□□□ -0.19
COL12A1Q99715 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL12A1Q99715 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL12A1Q99715 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC13.86□□□□□ -0.19
COL12A1Q99715 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC13.86□□□□□ -0.19
COL12A1Q99715 U82695.1-201ENST00000635752 1889 ntBASIC13.86□□□□□ -0.19
COL12A1Q99715 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC13.86□□□□□ -0.19
COL12A1Q99715 AC092171.3-201ENST00000610122 2651 ntBASIC13.86□□□□□ -0.19
COL12A1Q99715 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC13.86□□□□□ -0.19
COL12A1Q99715 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC13.86□□□□□ -0.19
COL12A1Q99715 AC027139.1-201ENST00000565286 951 ntBASIC13.86□□□□□ -0.19
COL12A1Q99715 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
COL12A1Q99715 AC013467.2-201ENST00000605472 835 ntBASIC13.86□□□□□ -0.19
COL12A1Q99715 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC13.86□□□□□ -0.19
COL12A1Q99715 AC067852.2-201ENST00000590513 2313 ntBASIC13.86□□□□□ -0.19
COL12A1Q99715 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
COL12A1Q99715 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.86□□□□□ -0.19
COL12A1Q99715 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC13.86□□□□□ -0.19
COL12A1Q99715 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
COL12A1Q99715 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC13.86□□□□□ -0.19
COL12A1Q99715 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.86□□□□□ -0.19
COL12A1Q99715 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC13.86□□□□□ -0.19
COL12A1Q99715 Z97180.1-201ENST00000445173 988 ntBASIC13.86□□□□□ -0.19
COL12A1Q99715 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC13.86□□□□□ -0.19
COL12A1Q99715 AC022137.2-201ENST00000503482 481 ntBASIC13.86□□□□□ -0.19
COL12A1Q99715 IGLV3-15-201ENST00000518356 244 ntBASIC13.86□□□□□ -0.19
COL12A1Q99715 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 TUBBP5-203ENST00000508529 1334 ntBASIC13.86□□□□□ -0.19
COL12A1Q99715 RERG-209ENST00000546331 1383 ntTSL 2 BASIC13.86□□□□□ -0.19
COL12A1Q99715 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC13.86□□□□□ -0.19
COL12A1Q99715 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC13.86□□□□□ -0.19
COL12A1Q99715 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC13.86□□□□□ -0.19
COL12A1Q99715 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
COL12A1Q99715 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC13.86□□□□□ -0.19
COL12A1Q99715 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
COL12A1Q99715 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL12A1Q99715 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
COL12A1Q99715 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC13.85□□□□□ -0.19
COL12A1Q99715 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.85□□□□□ -0.19
COL12A1Q99715 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
COL12A1Q99715 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
COL12A1Q99715 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms