Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 KLF2P3-201ENST00000451977 1087 ntBASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 CYMP-203ENST00000474680 1263 ntBASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 AC125807.1-201ENST00000483097 614 ntBASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.27■□□□□ 0.03
PTCHD1Q96NR3 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.27■□□□□ 0.03
PTCHD1Q96NR3 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.27■□□□□ 0.03
PTCHD1Q96NR3 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.27■□□□□ 0.03
PTCHD1Q96NR3 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
PTCHD1Q96NR3 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 AC107890.1-201ENST00000422478 521 ntBASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 AC061975.2-201ENST00000581722 295 ntBASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PTCHD1Q96NR3 CYP2T1P-202ENST00000641596 2535 ntBASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PTCHD1Q96NR3 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms