Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 PAUPAR-201ENST00000630360 2965 ntBASIC12.51□□□□□ -0.41
CCDC140Q96MF4 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 MIR1233-2-201ENST00000408138 82 ntBASIC12.51□□□□□ -0.41
CCDC140Q96MF4 MIR1233-1-201ENST00000408722 82 ntBASIC12.51□□□□□ -0.41
CCDC140Q96MF4 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 GPS2P2-201ENST00000430745 888 ntBASIC12.51□□□□□ -0.41
CCDC140Q96MF4 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 ALG1L8P-201ENST00000533887 760 ntBASIC12.51□□□□□ -0.41
CCDC140Q96MF4 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CCDC140Q96MF4 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 AC132872.4-202ENST00000622924 2756 ntBASIC12.5□□□□□ -0.41
CCDC140Q96MF4 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 STK33P1-201ENST00000423835 1218 ntBASIC12.5□□□□□ -0.41
CCDC140Q96MF4 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 CNN2P11-201ENST00000429351 262 ntBASIC12.5□□□□□ -0.41
CCDC140Q96MF4 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 GATD1-206ENST00000526325 756 ntTSL 5 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 AC027612.4-201ENST00000605371 583 ntBASIC12.5□□□□□ -0.41
CCDC140Q96MF4 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 GOLGA6L17P-202ENST00000614358 1398 ntBASIC12.5□□□□□ -0.41
CCDC140Q96MF4 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 AP005117.1-202ENST00000581724 1908 ntBASIC12.5□□□□□ -0.41
CCDC140Q96MF4 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CCDC140Q96MF4 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms