Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.5■□□□□ 0.39
CCDC42Q96M95 AC012640.2-201ENST00000561606 901 ntBASIC17.5■□□□□ 0.39
CCDC42Q96M95 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CCDC42Q96M95 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC42Q96M95 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC42Q96M95 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CCDC42Q96M95 AC006058.4-201ENST00000624016 1670 ntBASIC17.5■□□□□ 0.39
CCDC42Q96M95 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC42Q96M95 MST1L-201ENST00000442552 2185 ntBASIC17.5■□□□□ 0.39
CCDC42Q96M95 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC42Q96M95 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC42Q96M95 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC42Q96M95 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CCDC42Q96M95 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CCDC42Q96M95 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC42Q96M95 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC42Q96M95 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC42Q96M95 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC17.49■□□□□ 0.39
CCDC42Q96M95 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 AC093724.1-201ENST00000448659 1027 ntBASIC17.49■□□□□ 0.39
CCDC42Q96M95 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.49■□□□□ 0.39
CCDC42Q96M95 FAM197Y8-203ENST00000450145 560 ntBASIC17.49■□□□□ 0.39
CCDC42Q96M95 AL513480.1-201ENST00000451731 511 ntBASIC17.49■□□□□ 0.39
CCDC42Q96M95 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC42Q96M95 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC42Q96M95 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC42Q96M95 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.49■□□□□ 0.39
CCDC42Q96M95 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CCDC42Q96M95 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
CCDC42Q96M95 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.49■□□□□ 0.39
CCDC42Q96M95 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CCDC42Q96M95 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 TP73-AS1-207ENST00000624167 988 ntBASIC17.49■□□□□ 0.39
CCDC42Q96M95 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC42Q96M95 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC42Q96M95 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CCDC42Q96M95 AC023157.3-201ENST00000619086 2088 ntBASIC17.49■□□□□ 0.39
CCDC42Q96M95 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
CCDC42Q96M95 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC42Q96M95 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC42Q96M95 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC42Q96M95 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC17.48■□□□□ 0.39
CCDC42Q96M95 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC42Q96M95 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.48■□□□□ 0.39
CCDC42Q96M95 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC42Q96M95 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC42Q96M95 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC42Q96M95 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC42Q96M95 CICP13-201ENST00000422015 2789 ntBASIC17.48■□□□□ 0.39
CCDC42Q96M95 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.48■□□□□ 0.39
CCDC42Q96M95 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC42Q96M95 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC42Q96M95 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC42Q96M95 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC42Q96M95 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC42Q96M95 MIR1224-201ENST00000408193 85 ntBASIC17.48■□□□□ 0.39
CCDC42Q96M95 PRSS29P-201ENST00000440800 595 ntBASIC17.48■□□□□ 0.39
CCDC42Q96M95 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC42Q96M95 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC42Q96M95 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC42Q96M95 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC42Q96M95 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
CCDC42Q96M95 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC42Q96M95 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC42Q96M95 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC42Q96M95 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC42Q96M95 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC42Q96M95 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms