Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 AC132938.2-201ENST00000579188 680 ntBASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 AC017083.2-201ENST00000608069 979 ntBASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 AC004840.1-201ENST00000636359 365 ntBASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 AL591163.1-201ENST00000641757 987 ntBASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 AL353779.1-201ENST00000434793 351 ntBASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 GNAQP1-201ENST00000444815 1067 ntBASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 AC021097.1-201ENST00000607902 574 ntBASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 AL844908.2-201ENST00000609461 460 ntBASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 LTF-203ENST00000426532 2494 ntTSL 2 BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 AC112504.1-201ENST00000623415 1841 ntBASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 OR6D1P-202ENST00000641007 5290 ntBASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 HCG11-201ENST00000411553 5696 ntBASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SH3RF1Q7Z6J0 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
SH3RF1Q7Z6J0 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.46■□□□□ 0.54
SH3RF1Q7Z6J0 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.54
SH3RF1Q7Z6J0 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 ACA64.2-201ENST00000459014 129 ntBASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.45■□□□□ 0.54
SH3RF1Q7Z6J0 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 CDC14C-201ENST00000428251 1719 ntBASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 AC098614.1-201ENST00000368528 745 ntBASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 TEX28P1-201ENST00000613479 1221 ntBASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 TEX28P2-201ENST00000617764 1221 ntBASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SH3RF1Q7Z6J0 AC105917.1-201ENST00000506637 2539 ntBASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms