Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 PRAL-201ENST00000624952 3286 ntBASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 AC142381.1-201ENST00000426099 345 ntBASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 AC098859.1-201ENST00000502915 1238 ntBASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 LINC01225-203ENST00000563550 1244 ntBASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 SPTSSB-204ENST00000617024 1292 ntBASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 C20orf181-201ENST00000623918 480 ntBASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 AC008267.7-201ENST00000624570 1194 ntBASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF549Q6P9A3 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 YBX2P1-201ENST00000394192 760 ntBASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 SPCS2P4-201ENST00000436160 681 ntBASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 ALG1L5P-201ENST00000482043 771 ntBASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 AC061975.2-201ENST00000581722 295 ntBASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
ZNF549Q6P9A3 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms