Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
RAE1P78406 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.32■□□□□ 0.04
RAE1P78406 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
RAE1P78406 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
RAE1P78406 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.32■□□□□ 0.04
RAE1P78406 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.32■□□□□ 0.04
RAE1P78406 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.32■□□□□ 0.04
RAE1P78406 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.32■□□□□ 0.04
RAE1P78406 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.32■□□□□ 0.04
RAE1P78406 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.32■□□□□ 0.04
RAE1P78406 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.32■□□□□ 0.04
RAE1P78406 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
RAE1P78406 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.32■□□□□ 0.04
RAE1P78406 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
RAE1P78406 AC084121.4-201ENST00000641598 221 ntBASIC15.32■□□□□ 0.04
RAE1P78406 AF228730.8-201ENST00000642140 221 ntBASIC15.32■□□□□ 0.04
RAE1P78406 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.32■□□□□ 0.04
RAE1P78406 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
RAE1P78406 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.32■□□□□ 0.04
RAE1P78406 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.32■□□□□ 0.04
RAE1P78406 AC013268.4-201ENST00000637413 2228 ntBASIC15.32■□□□□ 0.04
RAE1P78406 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 AC018892.3-201ENST00000623986 2499 ntBASIC15.32■□□□□ 0.04
RAE1P78406 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RAE1P78406 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 AL136982.4-201ENST00000437689 1740 ntBASIC15.31■□□□□ 0.04
RAE1P78406 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
RAE1P78406 AC073347.1-201ENST00000421633 2643 ntBASIC15.31■□□□□ 0.04
RAE1P78406 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
RAE1P78406 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.31■□□□□ 0.04
RAE1P78406 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
RAE1P78406 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.31■□□□□ 0.04
RAE1P78406 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.31■□□□□ 0.04
RAE1P78406 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.31■□□□□ 0.04
RAE1P78406 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.31■□□□□ 0.04
RAE1P78406 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.31■□□□□ 0.04
RAE1P78406 KRT8P23-201ENST00000560090 1207 ntBASIC15.31■□□□□ 0.04
RAE1P78406 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.31■□□□□ 0.04
RAE1P78406 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.31■□□□□ 0.04
RAE1P78406 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.31■□□□□ 0.04
RAE1P78406 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
RAE1P78406 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.31■□□□□ 0.04
RAE1P78406 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
RAE1P78406 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.31■□□□□ 0.04
RAE1P78406 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
RAE1P78406 PPT1-215ENST00000641471 2368 ntBASIC15.31■□□□□ 0.04
RAE1P78406 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RAE1P78406 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
RAE1P78406 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
RAE1P78406 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.3■□□□□ 0.04
RAE1P78406 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.3■□□□□ 0.04
RAE1P78406 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
RAE1P78406 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 ELL2P1-201ENST00000413990 1906 ntBASIC15.3■□□□□ 0.04
RAE1P78406 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RAE1P78406 RPS8P6-201ENST00000426177 609 ntBASIC15.3■□□□□ 0.04
RAE1P78406 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms