Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCNA1P78396 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC18.24■□□□□ 0.51
CCNA1P78396 AC005229.1-201ENST00000392885 409 ntBASIC18.24■□□□□ 0.51
CCNA1P78396 ACTBP11-201ENST00000436287 1126 ntBASIC18.24■□□□□ 0.51
CCNA1P78396 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC18.24■□□□□ 0.51
CCNA1P78396 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCNA1P78396 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC18.24■□□□□ 0.51
CCNA1P78396 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC18.24■□□□□ 0.51
CCNA1P78396 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.24■□□□□ 0.51
CCNA1P78396 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC18.24■□□□□ 0.51
CCNA1P78396 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCNA1P78396 RN7SL219P-201ENST00000582872 296 ntBASIC18.24■□□□□ 0.51
CCNA1P78396 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC18.24■□□□□ 0.51
CCNA1P78396 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCNA1P78396 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCNA1P78396 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC18.24■□□□□ 0.51
CCNA1P78396 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCNA1P78396 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCNA1P78396 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCNA1P78396 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.24■□□□□ 0.51
CCNA1P78396 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CCNA1P78396 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCNA1P78396 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCNA1P78396 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.24■□□□□ 0.51
CCNA1P78396 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCNA1P78396 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCNA1P78396 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.23■□□□□ 0.51
CCNA1P78396 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.23■□□□□ 0.51
CCNA1P78396 INTS4P2-202ENST00000614726 2019 ntBASIC18.23■□□□□ 0.51
CCNA1P78396 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.23■□□□□ 0.51
CCNA1P78396 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.23■□□□□ 0.51
CCNA1P78396 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.23■□□□□ 0.51
CCNA1P78396 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.23■□□□□ 0.51
CCNA1P78396 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.23■□□□□ 0.51
CCNA1P78396 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 BNIP3P1-202ENST00000550043 1585 ntBASIC18.23■□□□□ 0.51
CCNA1P78396 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.23■□□□□ 0.51
CCNA1P78396 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CCNA1P78396 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 AC074338.1-201ENST00000416825 156 ntBASIC18.23■□□□□ 0.51
CCNA1P78396 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.23■□□□□ 0.51
CCNA1P78396 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.23■□□□□ 0.51
CCNA1P78396 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CCNA1P78396 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.23■□□□□ 0.51
CCNA1P78396 AL583810.1-201ENST00000553344 1045 ntBASIC18.23■□□□□ 0.51
CCNA1P78396 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC18.23■□□□□ 0.51
CCNA1P78396 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC18.23■□□□□ 0.51
CCNA1P78396 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC18.23■□□□□ 0.51
CCNA1P78396 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.23■□□□□ 0.51
CCNA1P78396 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CCNA1P78396 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 ZBTB45P2-201ENST00000452245 1531 ntBASIC18.23■□□□□ 0.51
CCNA1P78396 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 AC093525.8-201ENST00000624099 1342 ntBASIC18.23■□□□□ 0.51
CCNA1P78396 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCNA1P78396 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCNA1P78396 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCNA1P78396 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCNA1P78396 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.22■□□□□ 0.51
CCNA1P78396 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CCNA1P78396 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCNA1P78396 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCNA1P78396 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCNA1P78396 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC18.22■□□□□ 0.51
CCNA1P78396 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCNA1P78396 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCNA1P78396 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC18.22■□□□□ 0.51
CCNA1P78396 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCNA1P78396 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CCNA1P78396 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCNA1P78396 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.22■□□□□ 0.51
CCNA1P78396 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.22■□□□□ 0.51
CCNA1P78396 AL355864.2-201ENST00000447420 863 ntBASIC18.22■□□□□ 0.51
CCNA1P78396 BCRP2-202ENST00000447763 634 ntBASIC18.22■□□□□ 0.51
CCNA1P78396 FO681548.1-201ENST00000455617 1132 ntBASIC18.22■□□□□ 0.51
CCNA1P78396 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCNA1P78396 BCRP6-201ENST00000510112 632 ntBASIC18.22■□□□□ 0.51
CCNA1P78396 BCRP7-201ENST00000511549 544 ntBASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms