Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
HTTP42858 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.8■□□□□ 0.44
HTTP42858 AC015910.1-201ENST00000579400 975 ntBASIC17.8■□□□□ 0.44
HTTP42858 AC073352.2-201ENST00000609385 439 ntBASIC17.8■□□□□ 0.44
HTTP42858 CU633904.3-201ENST00000624042 1029 ntBASIC17.8■□□□□ 0.44
HTTP42858 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HTTP42858 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
HTTP42858 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
HTTP42858 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.8■□□□□ 0.44
HTTP42858 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
HTTP42858 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HTTP42858 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HTTP42858 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
HTTP42858 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.79■□□□□ 0.44
HTTP42858 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.79■□□□□ 0.44
HTTP42858 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC17.79■□□□□ 0.44
HTTP42858 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
HTTP42858 SLED1-202ENST00000512051 380 ntBASIC17.79■□□□□ 0.44
HTTP42858 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC17.79■□□□□ 0.44
HTTP42858 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC17.79■□□□□ 0.44
HTTP42858 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.79■□□□□ 0.44
HTTP42858 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC17.79■□□□□ 0.44
HTTP42858 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HTTP42858 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
HTTP42858 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HTTP42858 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HTTP42858 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HTTP42858 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
HTTP42858 AC008132.1-202ENST00000342005 1389 ntBASIC17.79■□□□□ 0.44
HTTP42858 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HTTP42858 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HTTP42858 ACKR1-201ENST00000368121 1240 ntBASIC17.79■□□□□ 0.44
HTTP42858 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.79■□□□□ 0.44
HTTP42858 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC17.79■□□□□ 0.44
HTTP42858 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC17.79■□□□□ 0.44
HTTP42858 CNN2P10-201ENST00000443067 918 ntBASIC17.79■□□□□ 0.44
HTTP42858 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HTTP42858 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC17.79■□□□□ 0.44
HTTP42858 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
HTTP42858 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HTTP42858 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HTTP42858 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HTTP42858 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HTTP42858 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.79■□□□□ 0.44
HTTP42858 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
HTTP42858 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC17.78■□□□□ 0.44
HTTP42858 CEP164P1-201ENST00000455142 418 ntBASIC17.78■□□□□ 0.44
HTTP42858 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC17.78■□□□□ 0.44
HTTP42858 SDHD-202ENST00000525291 790 ntTSL 3 BASIC17.78■□□□□ 0.44
HTTP42858 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HTTP42858 WDR7-208ENST00000589935 544 ntTSL 4 BASIC17.78■□□□□ 0.44
HTTP42858 HLA-A-202ENST00000376806 1854 ntBASIC17.78■□□□□ 0.44
HTTP42858 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.78■□□□□ 0.44
HTTP42858 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
HTTP42858 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HTTP42858 REXO1L1P-202ENST00000608646 1974 ntBASIC17.78■□□□□ 0.44
HTTP42858 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HTTP42858 AC018695.7-201ENST00000624587 2492 ntBASIC17.78■□□□□ 0.44
HTTP42858 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
HTTP42858 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.78■□□□□ 0.44
HTTP42858 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC17.78■□□□□ 0.44
HTTP42858 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC17.78■□□□□ 0.44
HTTP42858 LY6E-208ENST00000520531 490 ntTSL 2 BASIC17.78■□□□□ 0.44
HTTP42858 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC17.78■□□□□ 0.44
HTTP42858 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
HTTP42858 AC006453.4-201ENST00000636949 1252 ntBASIC17.78■□□□□ 0.44
HTTP42858 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HTTP42858 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HTTP42858 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.78■□□□□ 0.44
HTTP42858 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HTTP42858 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HTTP42858 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HTTP42858 SUPT4H1P2-201ENST00000501248 353 ntBASIC17.78■□□□□ 0.44
HTTP42858 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC17.78■□□□□ 0.44
HTTP42858 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.78■□□□□ 0.44
HTTP42858 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HTTP42858 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HTTP42858 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
HTTP42858 SMS-201ENST00000379404 1174 ntTSL 3 BASIC17.77■□□□□ 0.44
HTTP42858 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC17.77■□□□□ 0.44
HTTP42858 AC136604.1-201ENST00000418535 575 ntBASIC17.77■□□□□ 0.44
HTTP42858 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC17.77■□□□□ 0.44
HTTP42858 AL121723.1-201ENST00000445194 1519 ntBASIC17.77■□□□□ 0.44
HTTP42858 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.77■□□□□ 0.44
HTTP42858 AL390961.4-201ENST00000623958 2535 ntBASIC17.77■□□□□ 0.44
HTTP42858 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HTTP42858 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
HTTP42858 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.77■□□□□ 0.44
HTTP42858 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HTTP42858 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HTTP42858 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.77■□□□□ 0.44
HTTP42858 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.77■□□□□ 0.44
HTTP42858 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HTTP42858 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HTTP42858 RN7SL181P-201ENST00000462921 277 ntBASIC17.77■□□□□ 0.43
HTTP42858 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HTTP42858 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC17.77■□□□□ 0.43
HTTP42858 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HTTP42858 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.77■□□□□ 0.43
HTTP42858 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms