Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC12.53□□□□□ -0.4
HOXD3P31249 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC12.53□□□□□ -0.4
HOXD3P31249 COQ9-214ENST00000567933 882 ntTSL 3 BASIC12.53□□□□□ -0.4
HOXD3P31249 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
HOXD3P31249 AC024267.1-201ENST00000582320 895 ntBASIC12.53□□□□□ -0.4
HOXD3P31249 AC027307.3-201ENST00000594262 1100 ntBASIC12.53□□□□□ -0.4
HOXD3P31249 SPDYE12P-201ENST00000618416 771 ntBASIC12.53□□□□□ -0.4
HOXD3P31249 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
HOXD3P31249 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HOXD3P31249 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HOXD3P31249 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
HOXD3P31249 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXD3P31249 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXD3P31249 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXD3P31249 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 RELA-227ENST00000615805 2236 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXD3P31249 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXD3P31249 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXD3P31249 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXD3P31249 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXD3P31249 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC12.52□□□□□ -0.4
HOXD3P31249 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.4
HOXD3P31249 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXD3P31249 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
HOXD3P31249 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC12.52□□□□□ -0.4
HOXD3P31249 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXD3P31249 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC12.52□□□□□ -0.4
HOXD3P31249 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXD3P31249 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
HOXD3P31249 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXD3P31249 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXD3P31249 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
HOXD3P31249 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXD3P31249 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC12.52□□□□□ -0.41
HOXD3P31249 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC12.52□□□□□ -0.41
HOXD3P31249 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
HOXD3P31249 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXD3P31249 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXD3P31249 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXD3P31249 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXD3P31249 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
HOXD3P31249 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXD3P31249 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC12.52□□□□□ -0.41
HOXD3P31249 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
HOXD3P31249 MRPS18AP1-201ENST00000414458 589 ntBASIC12.52□□□□□ -0.41
HOXD3P31249 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC12.52□□□□□ -0.41
HOXD3P31249 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC12.52□□□□□ -0.41
HOXD3P31249 AL353705.2-201ENST00000428243 662 ntBASIC12.52□□□□□ -0.41
HOXD3P31249 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC12.52□□□□□ -0.41
HOXD3P31249 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC12.52□□□□□ -0.41
HOXD3P31249 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC12.52□□□□□ -0.41
HOXD3P31249 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC12.52□□□□□ -0.41
HOXD3P31249 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC12.52□□□□□ -0.41
HOXD3P31249 AL590560.3-201ENST00000623350 461 ntBASIC12.52□□□□□ -0.41
HOXD3P31249 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
HOXD3P31249 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
HOXD3P31249 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXD3P31249 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXD3P31249 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXD3P31249 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC12.52□□□□□ -0.41
HOXD3P31249 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC12.52□□□□□ -0.41
HOXD3P31249 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC12.52□□□□□ -0.41
HOXD3P31249 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXD3P31249 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXD3P31249 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
HOXD3P31249 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXD3P31249 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
HOXD3P31249 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
HOXD3P31249 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.41
HOXD3P31249 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXD3P31249 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
HOXD3P31249 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
HOXD3P31249 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
HOXD3P31249 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXD3P31249 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
HOXD3P31249 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXD3P31249 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC12.51□□□□□ -0.41
HOXD3P31249 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
HOXD3P31249 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
HOXD3P31249 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms