Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC134915.1-201ENST00000426461 574 ntBASIC16.42■□□□□ 0.22
VCANP13611 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC16.42■□□□□ 0.22
VCANP13611 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC16.42■□□□□ 0.22
VCANP13611 MIR6842-201ENST00000612539 65 ntBASIC16.42■□□□□ 0.22
VCANP13611 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCANP13611 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.42■□□□□ 0.22
VCANP13611 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.42■□□□□ 0.22
VCANP13611 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.42■□□□□ 0.22
VCANP13611 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC16.42■□□□□ 0.22
VCANP13611 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.42■□□□□ 0.22
VCANP13611 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VCANP13611 SMS-201ENST00000379404 1174 ntTSL 3 BASIC16.41■□□□□ 0.22
VCANP13611 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC16.41■□□□□ 0.22
VCANP13611 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.41■□□□□ 0.22
VCANP13611 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.41■□□□□ 0.22
VCANP13611 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
VCANP13611 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
VCANP13611 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.41■□□□□ 0.22
VCANP13611 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
VCANP13611 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
VCANP13611 AC120045.2-201ENST00000567334 178 ntBASIC16.41■□□□□ 0.22
VCANP13611 AC093525.9-201ENST00000624961 1746 ntBASIC16.41■□□□□ 0.22
VCANP13611 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
VCANP13611 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.41■□□□□ 0.22
VCANP13611 AC093724.1-201ENST00000448659 1027 ntBASIC16.41■□□□□ 0.22
VCANP13611 IGLV3-15-201ENST00000518356 244 ntBASIC16.41■□□□□ 0.22
VCANP13611 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.41■□□□□ 0.22
VCANP13611 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC16.41■□□□□ 0.22
VCANP13611 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VCANP13611 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
VCANP13611 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCANP13611 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VCANP13611 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCANP13611 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.4■□□□□ 0.22
VCANP13611 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.4■□□□□ 0.22
VCANP13611 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.4■□□□□ 0.22
VCANP13611 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCANP13611 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCANP13611 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCANP13611 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
VCANP13611 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCANP13611 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCANP13611 AC233280.19-201ENST00000633223 136 ntBASIC16.4■□□□□ 0.22
VCANP13611 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VCANP13611 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCANP13611 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
VCANP13611 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
VCANP13611 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCANP13611 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCANP13611 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
VCANP13611 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.4■□□□□ 0.22
VCANP13611 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCANP13611 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.4■□□□□ 0.22
VCANP13611 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VCANP13611 AC078991.1-201ENST00000437297 610 ntBASIC16.4■□□□□ 0.22
VCANP13611 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCANP13611 IGHV3-37-201ENST00000518544 340 ntBASIC16.4■□□□□ 0.22
VCANP13611 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.4■□□□□ 0.22
VCANP13611 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VCANP13611 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VCANP13611 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
VCANP13611 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VCANP13611 AC092053.1-201ENST00000605787 1936 ntBASIC16.39■□□□□ 0.21
VCANP13611 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VCANP13611 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VCANP13611 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC16.39■□□□□ 0.21
VCANP13611 AL133466.1-201ENST00000447582 150 ntBASIC16.39■□□□□ 0.21
VCANP13611 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC16.39■□□□□ 0.21
VCANP13611 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
VCANP13611 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VCANP13611 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VCANP13611 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VCANP13611 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VCANP13611 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
VCANP13611 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.39■□□□□ 0.21
VCANP13611 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VCANP13611 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC16.39■□□□□ 0.21
VCANP13611 AL357373.1-201ENST00000394974 322 ntBASIC16.39■□□□□ 0.21
VCANP13611 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC16.39■□□□□ 0.21
VCANP13611 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC16.39■□□□□ 0.21
VCANP13611 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VCANP13611 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16.39■□□□□ 0.21
VCANP13611 AC009486.1-201ENST00000569860 813 ntBASIC16.39■□□□□ 0.21
VCANP13611 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VCANP13611 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms