Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.34■□□□□ 0.21
VIMP08670 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
VIMP08670 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC16.34■□□□□ 0.21
VIMP08670 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.33■□□□□ 0.21
VIMP08670 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
VIMP08670 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.21
VIMP08670 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VIMP08670 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VIMP08670 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
VIMP08670 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
VIMP08670 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
VIMP08670 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VIMP08670 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VIMP08670 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
VIMP08670 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 LINC00528-201ENST00000600723 2160 ntBASIC16.33■□□□□ 0.2
VIMP08670 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.33■□□□□ 0.2
VIMP08670 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.33■□□□□ 0.2
VIMP08670 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 UCKL1-AS1-201ENST00000623569 3602 ntBASIC16.33■□□□□ 0.2
VIMP08670 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
VIMP08670 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.33■□□□□ 0.2
VIMP08670 BX664615.1-201ENST00000443558 458 ntBASIC16.33■□□□□ 0.2
VIMP08670 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.33■□□□□ 0.2
VIMP08670 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.33■□□□□ 0.2
VIMP08670 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.33■□□□□ 0.2
VIMP08670 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 IGHV3-41-201ENST00000613121 348 ntBASIC16.33■□□□□ 0.2
VIMP08670 AC005363.2-201ENST00000618631 242 ntBASIC16.33■□□□□ 0.2
VIMP08670 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
VIMP08670 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
VIMP08670 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
VIMP08670 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
VIMP08670 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.33■□□□□ 0.2
VIMP08670 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 AC091951.1-201ENST00000512854 2465 ntBASIC16.33■□□□□ 0.2
VIMP08670 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
VIMP08670 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VIMP08670 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.32■□□□□ 0.2
VIMP08670 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
VIMP08670 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
VIMP08670 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
VIMP08670 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
VIMP08670 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
VIMP08670 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC16.32■□□□□ 0.2
VIMP08670 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.32■□□□□ 0.2
VIMP08670 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
VIMP08670 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
VIMP08670 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 HOMER2P1-201ENST00000455653 964 ntBASIC16.32■□□□□ 0.2
VIMP08670 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
VIMP08670 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.32■□□□□ 0.2
VIMP08670 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.32■□□□□ 0.2
VIMP08670 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.32■□□□□ 0.2
VIMP08670 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
VIMP08670 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
VIMP08670 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.32■□□□□ 0.2
VIMP08670 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms