Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.08■□□□□ 0.32
RTN3O95197 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
RTN3O95197 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RTN3O95197 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.07■□□□□ 0.32
RTN3O95197 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RTN3O95197 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.07■□□□□ 0.32
RTN3O95197 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.07■□□□□ 0.32
RTN3O95197 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
RTN3O95197 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
RTN3O95197 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
RTN3O95197 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.07■□□□□ 0.32
RTN3O95197 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.07■□□□□ 0.32
RTN3O95197 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
RTN3O95197 MIR4321-201ENST00000592276 80 ntBASIC17.07■□□□□ 0.32
RTN3O95197 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.07■□□□□ 0.32
RTN3O95197 AL589739.1-201ENST00000607720 493 ntBASIC17.07■□□□□ 0.32
RTN3O95197 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.07■□□□□ 0.32
RTN3O95197 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
RTN3O95197 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RTN3O95197 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.06■□□□□ 0.32
RTN3O95197 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.06■□□□□ 0.32
RTN3O95197 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.06■□□□□ 0.32
RTN3O95197 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.06■□□□□ 0.32
RTN3O95197 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
RTN3O95197 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.06■□□□□ 0.32
RTN3O95197 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.06■□□□□ 0.32
RTN3O95197 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
RTN3O95197 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.06■□□□□ 0.32
RTN3O95197 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.06■□□□□ 0.32
RTN3O95197 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.06■□□□□ 0.32
RTN3O95197 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.06■□□□□ 0.32
RTN3O95197 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.06■□□□□ 0.32
RTN3O95197 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.06■□□□□ 0.32
RTN3O95197 MIR3197-201ENST00000582241 73 ntBASIC17.06■□□□□ 0.32
RTN3O95197 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.06■□□□□ 0.32
RTN3O95197 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.06■□□□□ 0.32
RTN3O95197 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.06■□□□□ 0.32
RTN3O95197 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.06■□□□□ 0.32
RTN3O95197 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.06■□□□□ 0.32
RTN3O95197 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RTN3O95197 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.06■□□□□ 0.32
RTN3O95197 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.06■□□□□ 0.32
RTN3O95197 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
RTN3O95197 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RTN3O95197 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RTN3O95197 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC17.05■□□□□ 0.32
RTN3O95197 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RTN3O95197 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RTN3O95197 AC100757.3-201ENST00000622361 1406 ntBASIC17.05■□□□□ 0.32
RTN3O95197 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.05■□□□□ 0.32
RTN3O95197 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RTN3O95197 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RTN3O95197 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.05■□□□□ 0.32
RTN3O95197 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RTN3O95197 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.05■□□□□ 0.32
RTN3O95197 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
RTN3O95197 AL139010.1-201ENST00000454878 894 ntBASIC17.05■□□□□ 0.32
RTN3O95197 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC17.05■□□□□ 0.32
RTN3O95197 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.05■□□□□ 0.32
RTN3O95197 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.05■□□□□ 0.32
RTN3O95197 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.05■□□□□ 0.32
RTN3O95197 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.05■□□□□ 0.32
RTN3O95197 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.05■□□□□ 0.32
RTN3O95197 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RTN3O95197 AL133215.2-201ENST00000609242 977 ntBASIC17.05■□□□□ 0.32
RTN3O95197 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms