Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SHOX2O60902 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.22■□□□□ 0.19
SHOX2O60902 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHOX2O60902 CYP2A7P1-201ENST00000595391 815 ntBASIC16.22■□□□□ 0.19
SHOX2O60902 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.22■□□□□ 0.19
SHOX2O60902 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.22■□□□□ 0.19
SHOX2O60902 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC16.22■□□□□ 0.19
SHOX2O60902 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHOX2O60902 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHOX2O60902 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHOX2O60902 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHOX2O60902 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHOX2O60902 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHOX2O60902 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SHOX2O60902 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHOX2O60902 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SHOX2O60902 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHOX2O60902 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SHOX2O60902 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHOX2O60902 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHOX2O60902 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.22■□□□□ 0.19
SHOX2O60902 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
SHOX2O60902 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SHOX2O60902 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHOX2O60902 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHOX2O60902 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHOX2O60902 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SHOX2O60902 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SHOX2O60902 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHOX2O60902 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC16.21■□□□□ 0.19
SHOX2O60902 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC16.21■□□□□ 0.19
SHOX2O60902 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHOX2O60902 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SHOX2O60902 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHOX2O60902 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
SHOX2O60902 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SHOX2O60902 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHOX2O60902 STARP1-201ENST00000397973 869 ntBASIC16.21■□□□□ 0.19
SHOX2O60902 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
SHOX2O60902 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SHOX2O60902 KRT18P38-201ENST00000449496 1282 ntBASIC16.21■□□□□ 0.19
SHOX2O60902 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SHOX2O60902 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHOX2O60902 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.21■□□□□ 0.19
SHOX2O60902 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.21■□□□□ 0.19
SHOX2O60902 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.21■□□□□ 0.19
SHOX2O60902 AC091167.2-201ENST00000579581 588 ntBASIC16.21■□□□□ 0.19
SHOX2O60902 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.21■□□□□ 0.19
SHOX2O60902 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.21■□□□□ 0.19
SHOX2O60902 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.21■□□□□ 0.19
SHOX2O60902 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHOX2O60902 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SHOX2O60902 AC092135.3-201ENST00000624151 1846 ntBASIC16.21■□□□□ 0.19
SHOX2O60902 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.21■□□□□ 0.19
SHOX2O60902 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SHOX2O60902 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
SHOX2O60902 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SHOX2O60902 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SHOX2O60902 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SHOX2O60902 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SHOX2O60902 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SHOX2O60902 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.2■□□□□ 0.18
SHOX2O60902 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 U82695.1-201ENST00000635752 1889 ntBASIC16.2■□□□□ 0.18
SHOX2O60902 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
SHOX2O60902 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 AC023024.2-201ENST00000623561 1993 ntBASIC16.2■□□□□ 0.18
SHOX2O60902 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC16.2■□□□□ 0.18
SHOX2O60902 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SHOX2O60902 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
SHOX2O60902 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.2■□□□□ 0.18
SHOX2O60902 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SHOX2O60902 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.2■□□□□ 0.18
SHOX2O60902 AL845331.1-201ENST00000424978 1190 ntBASIC16.2■□□□□ 0.18
SHOX2O60902 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.2■□□□□ 0.18
SHOX2O60902 VENTXP5-201ENST00000523979 775 ntBASIC16.2■□□□□ 0.18
SHOX2O60902 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 AC133561.5-201ENST00000635547 218 ntBASIC16.2■□□□□ 0.18
SHOX2O60902 AL031432.5-201ENST00000641059 760 ntBASIC16.2■□□□□ 0.18
SHOX2O60902 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SHOX2O60902 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SHOX2O60902 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SHOX2O60902 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 AL353732.1-201ENST00000569618 1459 ntBASIC16.2■□□□□ 0.18
SHOX2O60902 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
SHOX2O60902 PMPCAP1-201ENST00000508114 1576 ntBASIC16.2■□□□□ 0.18
SHOX2O60902 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.2■□□□□ 0.18
SHOX2O60902 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHOX2O60902 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms