Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 FOXO1B-201ENST00000504678 1527 ntBASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 SLC25A1P1-201ENST00000528351 927 ntBASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 PDPK2P-202ENST00000562415 1191 ntBASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 AC068137.2-201ENST00000605408 478 ntBASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TCRBV7S3A2A0A539 AC092127.1-201ENST00000567093 3455 ntBASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 TPM4P1-201ENST00000436100 807 ntBASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 AC074386.1-202ENST00000463561 864 ntBASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 AC018892.3-201ENST00000623986 2499 ntBASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 TNRC18P2-201ENST00000417666 2714 ntBASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TCRBV7S3A2A0A539 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 AC009090.5-201ENST00000624886 2285 ntBASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms