Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
TRIM35Q9UPQ4 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM35Q9UPQ4 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM35Q9UPQ4 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM35Q9UPQ4 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM35Q9UPQ4 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 PHKG1P2-201ENST00000457537 863 ntBASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 RN7SL618P-201ENST00000477850 296 ntBASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 AL365203.3-201ENST00000609742 2057 ntBASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM35Q9UPQ4 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 TNRC18P3-201ENST00000441896 2691 ntBASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 PRR29-204ENST00000577953 565 ntTSL 4 BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 AC011467.4-201ENST00000594891 528 ntBASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 AL109936.8-201ENST00000641772 604 ntBASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM35Q9UPQ4 Z97205.2-201ENST00000564697 1639 ntBASIC20.89■□□□□ 0.94
TRIM35Q9UPQ4 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM35Q9UPQ4 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM35Q9UPQ4 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM35Q9UPQ4 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM35Q9UPQ4 ACE-203ENST00000413513 2237 ntTSL 2 BASIC20.89■□□□□ 0.94
TRIM35Q9UPQ4 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC20.89■□□□□ 0.94
TRIM35Q9UPQ4 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 TARDBPP1-201ENST00000442013 1203 ntBASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 SERBP1P3-201ENST00000459980 809 ntBASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 RAB35-202ENST00000534951 939 ntTSL 2 BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 MIR4313-201ENST00000580760 101 ntBASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 RN7SL204P-201ENST00000582831 262 ntBASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 MIR6069-201ENST00000620069 79 ntBASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM35Q9UPQ4 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms