Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 KSR1-207ENST00000578981 748 ntTSL 4 BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 FOS-202ENST00000535987 1402 ntTSL 2 BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 HSPB1P2-201ENST00000448722 546 ntBASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 EHF-205ENST00000527935 557 ntTSL 2 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 ECM1P1-201ENST00000604092 1279 ntBASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 U62317.3-201ENST00000608319 855 ntBASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK3Q9BYB0 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 AC006001.1-201ENST00000325130 474 ntBASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 Z93015.1-201ENST00000451718 390 ntBASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 AL591846.1-201ENST00000451736 433 ntBASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 AL096828.3-201ENST00000615354 462 ntBASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 C2orf27AP3-201ENST00000434123 579 ntBASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 AL354718.3-201ENST00000616414 581 ntBASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 CR382287.1-201ENST00000623954 586 ntBASIC20.47■□□□□ 0.87
SHANK3Q9BYB0 TK1-203ENST00000588734 1681 ntTSL 2 BASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 GRN-222ENST00000639447 1314 ntTSL 2 BASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms