Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CHMP4AQ9BY43 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 WDR53-203ENST00000429115 683 ntTSL 2 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 TERF1P3-201ENST00000505638 1227 ntBASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 AC005052.1-201ENST00000625181 2492 ntBASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC20.57■□□□□ 0.88
CHMP4AQ9BY43 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 AC114501.2-201ENST00000439631 535 ntBASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 OARD1-208ENST00000469104 704 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 AC009407.1-201ENST00000568958 598 ntBASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 SPIB-207ENST00000597855 564 ntTSL 4 BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 5S_rRNA.22-201ENST00000614916 106 ntBASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 AC011477.6-201ENST00000604980 1927 ntBASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 PCDHA12-202ENST00000613593 2588 ntBASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4AQ9BY43 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 MRPS18AP1-201ENST00000414458 589 ntBASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 AL512361.1-201ENST00000554200 418 ntBASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 AC008761.3-201ENST00000624803 892 ntBASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 OVCH1-AS1-204ENST00000641955 5529 ntBASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4AQ9BY43 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms