Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 AC008738.7-201ENST00000609744 511 ntBASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAIPQ9BWF2 AC063926.2-201ENST00000623766 1308 ntBASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 LINC01144-201ENST00000626198 1710 ntBASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 AC012645.4-201ENST00000610691 1061 ntBASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAIPQ9BWF2 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 KRT8P12-202ENST00000472924 1397 ntBASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 AC027307.3-201ENST00000594262 1100 ntBASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 AL662799.1-202ENST00000614205 422 ntBASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 1115.9 ms