Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS39Q96JC1 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 MRPL3P1-201ENST00000400109 1033 ntBASIC16.29■□□□□ 0.2
VPS39Q96JC1 AC093724.1-201ENST00000448659 1027 ntBASIC16.29■□□□□ 0.2
VPS39Q96JC1 RNA5SP415-201ENST00000517246 115 ntBASIC16.29■□□□□ 0.2
VPS39Q96JC1 AC109635.5-201ENST00000533593 962 ntBASIC16.29■□□□□ 0.2
VPS39Q96JC1 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 AC096734.2-201ENST00000562054 433 ntBASIC16.29■□□□□ 0.2
VPS39Q96JC1 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 AC007064.4-201ENST00000637740 555 ntBASIC16.29■□□□□ 0.2
VPS39Q96JC1 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS39Q96JC1 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS39Q96JC1 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS39Q96JC1 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS39Q96JC1 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS39Q96JC1 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS39Q96JC1 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS39Q96JC1 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS39Q96JC1 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS39Q96JC1 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS39Q96JC1 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS39Q96JC1 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS39Q96JC1 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 RHOQP3-201ENST00000437982 621 ntBASIC16.28■□□□□ 0.2
VPS39Q96JC1 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 IGHV3-22-201ENST00000520721 359 ntBASIC16.28■□□□□ 0.2
VPS39Q96JC1 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 AL009183.1-201ENST00000603760 355 ntBASIC16.28■□□□□ 0.2
VPS39Q96JC1 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS39Q96JC1 AC008677.1-201ENST00000519230 1561 ntBASIC16.28■□□□□ 0.2
VPS39Q96JC1 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS39Q96JC1 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS39Q96JC1 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS39Q96JC1 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS39Q96JC1 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
VPS39Q96JC1 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
VPS39Q96JC1 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS39Q96JC1 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS39Q96JC1 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS39Q96JC1 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS39Q96JC1 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS39Q96JC1 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS39Q96JC1 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS39Q96JC1 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.27■□□□□ 0.2
VPS39Q96JC1 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS39Q96JC1 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.27■□□□□ 0.2
VPS39Q96JC1 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS39Q96JC1 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC16.27■□□□□ 0.19
VPS39Q96JC1 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS39Q96JC1 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.27■□□□□ 0.19
VPS39Q96JC1 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
VPS39Q96JC1 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VPS39Q96JC1 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VPS39Q96JC1 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS39Q96JC1 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS39Q96JC1 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
VPS39Q96JC1 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS39Q96JC1 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS39Q96JC1 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS39Q96JC1 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS39Q96JC1 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS39Q96JC1 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS39Q96JC1 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS39Q96JC1 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
VPS39Q96JC1 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS39Q96JC1 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS39Q96JC1 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS39Q96JC1 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS39Q96JC1 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS39Q96JC1 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VPS39Q96JC1 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS39Q96JC1 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
VPS39Q96JC1 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS39Q96JC1 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.26■□□□□ 0.19
VPS39Q96JC1 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms