Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 AC004898.1-201ENST00000451057 766 ntBASIC17.44■□□□□ 0.38
LRCH3Q96II8 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 KRT90P-201ENST00000549264 1064 ntBASIC17.44■□□□□ 0.38
LRCH3Q96II8 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LRCH3Q96II8 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.44■□□□□ 0.38
LRCH3Q96II8 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 FTLP1-201ENST00000449155 526 ntBASIC17.43■□□□□ 0.38
LRCH3Q96II8 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 PFN2-215ENST00000497148 743 ntTSL 4 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 AP006547.1-201ENST00000563435 692 ntBASIC17.43■□□□□ 0.38
LRCH3Q96II8 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 AC022211.2-201ENST00000585075 2527 ntBASIC17.43■□□□□ 0.38
LRCH3Q96II8 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LRCH3Q96II8 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
LRCH3Q96II8 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LRCH3Q96II8 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LRCH3Q96II8 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LRCH3Q96II8 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.42■□□□□ 0.38
LRCH3Q96II8 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
LRCH3Q96II8 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LRCH3Q96II8 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
LRCH3Q96II8 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LRCH3Q96II8 MSTO2P-201ENST00000314835 1709 ntBASIC17.42■□□□□ 0.38
LRCH3Q96II8 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LRCH3Q96II8 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.42■□□□□ 0.38
LRCH3Q96II8 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC17.42■□□□□ 0.38
LRCH3Q96II8 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC17.42■□□□□ 0.38
LRCH3Q96II8 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC17.42■□□□□ 0.38
LRCH3Q96II8 AC106760.1-201ENST00000508690 800 ntBASIC17.42■□□□□ 0.38
LRCH3Q96II8 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.42■□□□□ 0.38
LRCH3Q96II8 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC17.42■□□□□ 0.38
LRCH3Q96II8 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LRCH3Q96II8 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC17.42■□□□□ 0.38
LRCH3Q96II8 RN7SL275P-201ENST00000582762 335 ntBASIC17.42■□□□□ 0.38
LRCH3Q96II8 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms