Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 IGHV3-42-201ENST00000520410 361 ntBASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 SPCS2P1-201ENST00000561636 679 ntBASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 MIR3197-201ENST00000582241 73 ntBASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 AC005498.2-205ENST00000593218 784 ntBASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 LINC02084-201ENST00000606069 1096 ntBASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLIP3Q96DZ5 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 CICP14-201ENST00000629111 2732 ntBASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 RNA5SP421-201ENST00000516864 134 ntBASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 AC051619.7-201ENST00000568314 623 ntBASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
CLIP3Q96DZ5 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.71■□□□□ 0.1
CLIP3Q96DZ5 AC105020.1-201ENST00000435356 2205 ntBASIC15.71■□□□□ 0.1
CLIP3Q96DZ5 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.1
CLIP3Q96DZ5 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CLIP3Q96DZ5 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CLIP3Q96DZ5 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CLIP3Q96DZ5 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.1
CLIP3Q96DZ5 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.71■□□□□ 0.1
CLIP3Q96DZ5 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CLIP3Q96DZ5 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 AL391256.1-201ENST00000443260 1855 ntBASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 PRYP6-201ENST00000514804 343 ntBASIC15.7■□□□□ 0.1
CLIP3Q96DZ5 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms