Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGB4Q8WW32 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 HIST3H2BA-201ENST00000436555 524 ntBASIC16.17■□□□□ 0.18
HMGB4Q8WW32 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 RRP7BP-205ENST00000566851 833 ntBASIC16.17■□□□□ 0.18
HMGB4Q8WW32 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 MIR8072-201ENST00000614241 80 ntBASIC16.17■□□□□ 0.18
HMGB4Q8WW32 AL033527.5-201ENST00000641382 801 ntBASIC16.17■□□□□ 0.18
HMGB4Q8WW32 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 GGT3P-204ENST00000453783 1664 ntBASIC16.17■□□□□ 0.18
HMGB4Q8WW32 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB4Q8WW32 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 TMEM261P1-201ENST00000604899 340 ntBASIC16.16■□□□□ 0.18
HMGB4Q8WW32 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 CDC14C-201ENST00000428251 1719 ntBASIC16.16■□□□□ 0.18
HMGB4Q8WW32 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HMGB4Q8WW32 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms