Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 IPPK-202ENST00000375522 882 ntTSL 3 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 HNRNPDP1-201ENST00000439535 754 ntBASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 AL513480.1-201ENST00000451731 511 ntBASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 AC108751.1-201ENST00000490852 363 ntBASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 MIR4751-201ENST00000578027 74 ntBASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 PRKN-208ENST00000610470 531 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 PRKN-209ENST00000612485 225 ntTSL 5 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 AC004870.1-201ENST00000315132 882 ntBASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 VN2R19P-201ENST00000442399 1052 ntBASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 KRT18P34-201ENST00000488218 1270 ntBASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 AC093909.1-201ENST00000504731 1122 ntBASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 AL773604.1-201ENST00000617417 272 ntBASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 AC117500.6-201ENST00000624871 588 ntBASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 AC112504.1-201ENST00000623415 1841 ntBASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC54Q8NEL0 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms