Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 AL139010.1-201ENST00000454878 894 ntBASIC16.59■□□□□ 0.25
RTL3Q8N8U3 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.59■□□□□ 0.25
RTL3Q8N8U3 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 AL603832.2-201ENST00000566195 2125 ntBASIC16.59■□□□□ 0.25
RTL3Q8N8U3 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 AL035456.1-201ENST00000456064 1369 ntBASIC16.59■□□□□ 0.25
RTL3Q8N8U3 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 AC069224.1-201ENST00000566372 1715 ntBASIC16.59■□□□□ 0.25
RTL3Q8N8U3 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.59■□□□□ 0.25
RTL3Q8N8U3 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
RTL3Q8N8U3 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RTL3Q8N8U3 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
RTL3Q8N8U3 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RTL3Q8N8U3 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.58■□□□□ 0.25
RTL3Q8N8U3 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.58■□□□□ 0.25
RTL3Q8N8U3 AC024909.3-201ENST00000611513 2257 ntBASIC16.58■□□□□ 0.25
RTL3Q8N8U3 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.58■□□□□ 0.25
RTL3Q8N8U3 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
RTL3Q8N8U3 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 AC243562.2-201ENST00000561247 970 ntBASIC16.58■□□□□ 0.24
RTL3Q8N8U3 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 AL691432.1-201ENST00000596308 1422 ntBASIC16.58■□□□□ 0.24
RTL3Q8N8U3 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 AL136982.4-201ENST00000437689 1740 ntBASIC16.58■□□□□ 0.24
RTL3Q8N8U3 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTL3Q8N8U3 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTL3Q8N8U3 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RTL3Q8N8U3 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.57■□□□□ 0.24
RTL3Q8N8U3 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.57■□□□□ 0.24
RTL3Q8N8U3 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTL3Q8N8U3 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.57■□□□□ 0.24
RTL3Q8N8U3 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
RTL3Q8N8U3 CDC14C-201ENST00000428251 1719 ntBASIC16.57■□□□□ 0.24
RTL3Q8N8U3 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RTL3Q8N8U3 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RTL3Q8N8U3 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.57■□□□□ 0.24
RTL3Q8N8U3 TUBB3P1-201ENST00000405796 1332 ntBASIC16.57■□□□□ 0.24
RTL3Q8N8U3 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTL3Q8N8U3 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.57■□□□□ 0.24
RTL3Q8N8U3 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.57■□□□□ 0.24
RTL3Q8N8U3 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTL3Q8N8U3 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.57■□□□□ 0.24
RTL3Q8N8U3 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms