Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 REXO1L8P-201ENST00000604378 1897 ntBASIC14.4□□□□□ -0.1
SKA3Q8IX90 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
SKA3Q8IX90 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.11
SKA3Q8IX90 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 AC079140.1-201ENST00000508039 487 ntBASIC14.39□□□□□ -0.11
SKA3Q8IX90 GATB-205ENST00000508611 605 ntTSL 2 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 PUS1-205ENST00000535067 838 ntTSL 3 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 C8orf49-201ENST00000525043 1968 ntBASIC14.39□□□□□ -0.11
SKA3Q8IX90 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.39□□□□□ -0.11
SKA3Q8IX90 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SKA3Q8IX90 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 RN7SL589P-201ENST00000481268 310 ntBASIC14.38□□□□□ -0.11
SKA3Q8IX90 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 DHDH-204ENST00000523250 634 ntTSL 5 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 AC027307.2-201ENST00000591252 911 ntBASIC14.38□□□□□ -0.11
SKA3Q8IX90 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC14.38□□□□□ -0.11
SKA3Q8IX90 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SKA3Q8IX90 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms