Protein–RNA interactions for Protein: Q8IVW4

CDKL3, Cyclin-dependent kinase-like 3, humanhuman

Predicted RBP Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL3Q8IVW4 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 AC073389.1-201ENST00000595595 795 ntBASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CDKL3Q8IVW4 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 AC063926.3-201ENST00000624734 5658 ntBASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 AC105233.2-201ENST00000523697 349 ntBASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 AF228730.5-201ENST00000530288 346 ntBASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 AP001282.1-201ENST00000531301 1499 ntBASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 AKAP8P1-201ENST00000434743 1349 ntBASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDKL3Q8IVW4 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.26
CDKL3Q8IVW4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.64■□□□□ 0.26
CDKL3Q8IVW4 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
CDKL3Q8IVW4 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
CDKL3Q8IVW4 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CDKL3Q8IVW4 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 AL355306.1-201ENST00000415580 579 ntBASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 AC098859.1-201ENST00000502915 1238 ntBASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms