Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 HAUS4P1-201ENST00000406739 1145 ntBASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 AC243562.1-201ENST00000560672 389 ntBASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
ZNF549Q6P9A3 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
ZNF549Q6P9A3 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ZNF549Q6P9A3 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.08■□□□□ 0.17
ZNF549Q6P9A3 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
ZNF549Q6P9A3 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
ZNF549Q6P9A3 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ZNF549Q6P9A3 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
ZNF549Q6P9A3 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 AC004832.2-201ENST00000426397 482 ntBASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 AC027307.2-201ENST00000591252 911 ntBASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
ZNF549Q6P9A3 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 AC245100.5-201ENST00000452108 331 ntBASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 KRT8P48-201ENST00000515599 1220 ntBASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 AC105233.2-201ENST00000523697 349 ntBASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 AF228730.5-201ENST00000530288 346 ntBASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.07■□□□□ 0.16
ZNF549Q6P9A3 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms