Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
PPP4R4Q6NUP7 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
PPP4R4Q6NUP7 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.63■□□□□ 0.09
PPP4R4Q6NUP7 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 AC097637.2-201ENST00000624096 1997 ntBASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 AC006277.1-201ENST00000624348 1610 ntBASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 FDX1P1-201ENST00000449115 551 ntBASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 AC092910.1-201ENST00000482027 1129 ntBASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC15.62■□□□□ 0.09
PPP4R4Q6NUP7 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 CYB561-217ENST00000582997 877 ntTSL 5 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 AL049840.3-201ENST00000602669 611 ntBASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PPP4R4Q6NUP7 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 AL009178.2-201ENST00000597278 2719 ntBASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PPP4R4Q6NUP7 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms