Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
YBX1P67809 GPS2P2-201ENST00000430745 888 ntBASIC15.8■□□□□ 0.12
YBX1P67809 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.8■□□□□ 0.12
YBX1P67809 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
YBX1P67809 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.8■□□□□ 0.12
YBX1P67809 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
YBX1P67809 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.8■□□□□ 0.12
YBX1P67809 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.8■□□□□ 0.12
YBX1P67809 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.8■□□□□ 0.12
YBX1P67809 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.8■□□□□ 0.12
YBX1P67809 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.8■□□□□ 0.12
YBX1P67809 AC073389.1-201ENST00000595595 795 ntBASIC15.8■□□□□ 0.12
YBX1P67809 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.8■□□□□ 0.12
YBX1P67809 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
YBX1P67809 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
YBX1P67809 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
YBX1P67809 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
YBX1P67809 AP002414.2-201ENST00000591780 3365 ntBASIC15.8■□□□□ 0.12
YBX1P67809 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
YBX1P67809 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
YBX1P67809 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.8■□□□□ 0.12
YBX1P67809 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
YBX1P67809 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
YBX1P67809 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
YBX1P67809 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.8■□□□□ 0.12
YBX1P67809 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
YBX1P67809 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
YBX1P67809 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.8■□□□□ 0.12
YBX1P67809 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.79■□□□□ 0.12
YBX1P67809 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
YBX1P67809 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
YBX1P67809 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.79■□□□□ 0.12
YBX1P67809 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.79■□□□□ 0.12
YBX1P67809 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.79■□□□□ 0.12
YBX1P67809 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
YBX1P67809 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.79■□□□□ 0.12
YBX1P67809 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
YBX1P67809 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.79■□□□□ 0.12
YBX1P67809 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.79■□□□□ 0.12
YBX1P67809 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.79■□□□□ 0.12
YBX1P67809 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.79■□□□□ 0.12
YBX1P67809 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
YBX1P67809 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.79■□□□□ 0.12
YBX1P67809 IGHV3-62-201ENST00000520057 340 ntBASIC15.79■□□□□ 0.12
YBX1P67809 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.79■□□□□ 0.12
YBX1P67809 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.79■□□□□ 0.12
YBX1P67809 AC004835.2-201ENST00000603762 682 ntBASIC15.79■□□□□ 0.12
YBX1P67809 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.79■□□□□ 0.12
YBX1P67809 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.79■□□□□ 0.12
YBX1P67809 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.79■□□□□ 0.12
YBX1P67809 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.79■□□□□ 0.12
YBX1P67809 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.79■□□□□ 0.12
YBX1P67809 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
YBX1P67809 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 CDC14C-201ENST00000428251 1719 ntBASIC15.79■□□□□ 0.12
YBX1P67809 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.79■□□□□ 0.12
YBX1P67809 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.79■□□□□ 0.12
YBX1P67809 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
YBX1P67809 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
YBX1P67809 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
YBX1P67809 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
YBX1P67809 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
YBX1P67809 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.78■□□□□ 0.12
YBX1P67809 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
YBX1P67809 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
YBX1P67809 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
YBX1P67809 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
YBX1P67809 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
YBX1P67809 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
YBX1P67809 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
YBX1P67809 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.78■□□□□ 0.12
YBX1P67809 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
YBX1P67809 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
YBX1P67809 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
YBX1P67809 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.78■□□□□ 0.12
YBX1P67809 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
YBX1P67809 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
YBX1P67809 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
YBX1P67809 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
YBX1P67809 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.78■□□□□ 0.12
YBX1P67809 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
YBX1P67809 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms