Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TNFSF9P41273 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TNFSF9P41273 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TNFSF9P41273 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TNFSF9P41273 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TNFSF9P41273 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TNFSF9P41273 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TNFSF9P41273 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.47■□□□□ 0.39
TNFSF9P41273 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.47■□□□□ 0.39
TNFSF9P41273 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TNFSF9P41273 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TNFSF9P41273 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TNFSF9P41273 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.46■□□□□ 0.39
TNFSF9P41273 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.46■□□□□ 0.39
TNFSF9P41273 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
TNFSF9P41273 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TNFSF9P41273 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.46■□□□□ 0.39
TNFSF9P41273 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.46■□□□□ 0.39
TNFSF9P41273 HIST3H2BA-201ENST00000436555 524 ntBASIC17.46■□□□□ 0.39
TNFSF9P41273 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TNFSF9P41273 RNA5SP421-201ENST00000516864 134 ntBASIC17.46■□□□□ 0.39
TNFSF9P41273 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.46■□□□□ 0.39
TNFSF9P41273 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.46■□□□□ 0.39
TNFSF9P41273 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.46■□□□□ 0.39
TNFSF9P41273 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
TNFSF9P41273 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
TNFSF9P41273 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TNFSF9P41273 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.46■□□□□ 0.38
TNFSF9P41273 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
TNFSF9P41273 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.46■□□□□ 0.38
TNFSF9P41273 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.45■□□□□ 0.38
TNFSF9P41273 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.45■□□□□ 0.38
TNFSF9P41273 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
TNFSF9P41273 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.45■□□□□ 0.38
TNFSF9P41273 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 MIR661-201ENST00000384842 89 ntBASIC17.45■□□□□ 0.38
TNFSF9P41273 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.45■□□□□ 0.38
TNFSF9P41273 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.45■□□□□ 0.38
TNFSF9P41273 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.45■□□□□ 0.38
TNFSF9P41273 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.45■□□□□ 0.38
TNFSF9P41273 AC243562.2-201ENST00000561247 970 ntBASIC17.45■□□□□ 0.38
TNFSF9P41273 AC010336.2-201ENST00000564226 506 ntBASIC17.45■□□□□ 0.38
TNFSF9P41273 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.45■□□□□ 0.38
TNFSF9P41273 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TNFSF9P41273 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
TNFSF9P41273 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TNFSF9P41273 AC087499.5-201ENST00000452760 1342 ntBASIC17.45■□□□□ 0.38
TNFSF9P41273 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFSF9P41273 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.44■□□□□ 0.38
TNFSF9P41273 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFSF9P41273 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFSF9P41273 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TNFSF9P41273 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFSF9P41273 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
TNFSF9P41273 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFSF9P41273 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFSF9P41273 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFSF9P41273 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
TNFSF9P41273 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
TNFSF9P41273 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TNFSF9P41273 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
TNFSF9P41273 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TNFSF9P41273 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFSF9P41273 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFSF9P41273 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.44■□□□□ 0.38
TNFSF9P41273 MIR648-201ENST00000385046 94 ntBASIC17.44■□□□□ 0.38
TNFSF9P41273 AC004987.2-201ENST00000395959 1148 ntBASIC17.44■□□□□ 0.38
TNFSF9P41273 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.44■□□□□ 0.38
TNFSF9P41273 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.44■□□□□ 0.38
TNFSF9P41273 AC009477.1-201ENST00000452936 217 ntBASIC17.44■□□□□ 0.38
TNFSF9P41273 AL512638.1-201ENST00000457493 794 ntBASIC17.44■□□□□ 0.38
TNFSF9P41273 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.44■□□□□ 0.38
TNFSF9P41273 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TNFSF9P41273 AC009407.1-201ENST00000568958 598 ntBASIC17.44■□□□□ 0.38
TNFSF9P41273 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.44■□□□□ 0.38
TNFSF9P41273 AJ011932.1-201ENST00000621707 465 ntBASIC17.44■□□□□ 0.38
TNFSF9P41273 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
TNFSF9P41273 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
TNFSF9P41273 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFSF9P41273 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
TNFSF9P41273 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TNFSF9P41273 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.44■□□□□ 0.38
TNFSF9P41273 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TNFSF9P41273 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TNFSF9P41273 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms