Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SCN4AP35499 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC18.73■□□□□ 0.59
SCN4AP35499 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SCN4AP35499 AC069218.1-201ENST00000435269 762 ntBASIC18.73■□□□□ 0.59
SCN4AP35499 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC18.73■□□□□ 0.59
SCN4AP35499 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC18.73■□□□□ 0.59
SCN4AP35499 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC18.73■□□□□ 0.59
SCN4AP35499 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
SCN4AP35499 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC18.73■□□□□ 0.59
SCN4AP35499 PRKXP1-201ENST00000561423 1122 ntBASIC18.73■□□□□ 0.59
SCN4AP35499 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC18.73■□□□□ 0.59
SCN4AP35499 AL133499.1-201ENST00000596207 608 ntBASIC18.73■□□□□ 0.59
SCN4AP35499 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC18.73■□□□□ 0.59
SCN4AP35499 AC007663.3-201ENST00000609632 465 ntBASIC18.73■□□□□ 0.59
SCN4AP35499 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
SCN4AP35499 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SCN4AP35499 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SCN4AP35499 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SCN4AP35499 AC067852.2-201ENST00000590513 2313 ntBASIC18.73■□□□□ 0.59
SCN4AP35499 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.72■□□□□ 0.59
SCN4AP35499 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SCN4AP35499 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SCN4AP35499 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC18.72■□□□□ 0.59
SCN4AP35499 AL008707.1-201ENST00000422498 534 ntBASIC18.72■□□□□ 0.59
SCN4AP35499 AC114501.1-201ENST00000445949 172 ntBASIC18.72■□□□□ 0.59
SCN4AP35499 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC18.72■□□□□ 0.59
SCN4AP35499 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SCN4AP35499 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SCN4AP35499 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SCN4AP35499 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.72■□□□□ 0.59
SCN4AP35499 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SCN4AP35499 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SCN4AP35499 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.72■□□□□ 0.59
SCN4AP35499 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SCN4AP35499 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SCN4AP35499 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SCN4AP35499 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SCN4AP35499 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SCN4AP35499 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.72■□□□□ 0.59
SCN4AP35499 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
SCN4AP35499 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SCN4AP35499 SMS-201ENST00000379404 1174 ntTSL 3 BASIC18.72■□□□□ 0.59
SCN4AP35499 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.72■□□□□ 0.59
SCN4AP35499 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SCN4AP35499 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC18.72■□□□□ 0.59
SCN4AP35499 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
SCN4AP35499 ETV2-208ENST00000621247 941 ntTSL 5 BASIC18.72■□□□□ 0.59
SCN4AP35499 TUBBP5-203ENST00000508529 1334 ntBASIC18.72■□□□□ 0.59
SCN4AP35499 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SCN4AP35499 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SCN4AP35499 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SCN4AP35499 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SCN4AP35499 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SCN4AP35499 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SCN4AP35499 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC18.71■□□□□ 0.59
SCN4AP35499 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
SCN4AP35499 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SCN4AP35499 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.71■□□□□ 0.59
SCN4AP35499 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SCN4AP35499 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SCN4AP35499 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SCN4AP35499 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC18.71■□□□□ 0.59
SCN4AP35499 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
SCN4AP35499 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC18.71■□□□□ 0.59
SCN4AP35499 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC18.71■□□□□ 0.59
SCN4AP35499 RN7SL774P-201ENST00000577467 290 ntBASIC18.71■□□□□ 0.59
SCN4AP35499 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SCN4AP35499 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC18.71■□□□□ 0.59
SCN4AP35499 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.71■□□□□ 0.59
SCN4AP35499 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SCN4AP35499 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SCN4AP35499 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
SCN4AP35499 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.71■□□□□ 0.59
SCN4AP35499 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
SCN4AP35499 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SCN4AP35499 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SCN4AP35499 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
SCN4AP35499 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
SCN4AP35499 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.7■□□□□ 0.58
SCN4AP35499 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SCN4AP35499 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
SCN4AP35499 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SCN4AP35499 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SCN4AP35499 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC18.7■□□□□ 0.58
SCN4AP35499 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC18.7■□□□□ 0.58
SCN4AP35499 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.7■□□□□ 0.58
SCN4AP35499 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SCN4AP35499 AC006480.2-201ENST00000609770 1337 ntBASIC18.7■□□□□ 0.58
SCN4AP35499 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.7■□□□□ 0.58
SCN4AP35499 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
SCN4AP35499 RN7SL181P-201ENST00000462921 277 ntBASIC18.7■□□□□ 0.58
SCN4AP35499 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC18.7■□□□□ 0.58
SCN4AP35499 AF254983.2-201ENST00000612331 135 ntBASIC18.7■□□□□ 0.58
SCN4AP35499 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.7■□□□□ 0.58
SCN4AP35499 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.7■□□□□ 0.58
SCN4AP35499 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SCN4AP35499 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SCN4AP35499 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SCN4AP35499 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SCN4AP35499 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms