Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC12.55□□□□□ -0.4
HOXD3P31249 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
HOXD3P31249 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC12.55□□□□□ -0.4
HOXD3P31249 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC12.55□□□□□ -0.4
HOXD3P31249 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
HOXD3P31249 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
HOXD3P31249 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
HOXD3P31249 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC12.55□□□□□ -0.4
HOXD3P31249 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXD3P31249 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
HOXD3P31249 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC12.54□□□□□ -0.4
HOXD3P31249 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXD3P31249 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 PCDHA14-201ENST00000506751 2298 ntBASIC12.54□□□□□ -0.4
HOXD3P31249 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXD3P31249 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXD3P31249 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
HOXD3P31249 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXD3P31249 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
HOXD3P31249 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXD3P31249 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC12.54□□□□□ -0.4
HOXD3P31249 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 FAM220BP-201ENST00000377689 816 ntBASIC12.54□□□□□ -0.4
HOXD3P31249 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC12.54□□□□□ -0.4
HOXD3P31249 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
HOXD3P31249 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC12.54□□□□□ -0.4
HOXD3P31249 CRB3P1-201ENST00000449338 276 ntBASIC12.54□□□□□ -0.4
HOXD3P31249 GAPDHP21-201ENST00000450301 1010 ntBASIC12.54□□□□□ -0.4
HOXD3P31249 AC004890.2-204ENST00000481968 304 ntBASIC12.54□□□□□ -0.4
HOXD3P31249 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC12.54□□□□□ -0.4
HOXD3P31249 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC12.54□□□□□ -0.4
HOXD3P31249 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC12.54□□□□□ -0.4
HOXD3P31249 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC12.54□□□□□ -0.4
HOXD3P31249 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXD3P31249 AC004233.3-201ENST00000607794 1269 ntBASIC12.54□□□□□ -0.4
HOXD3P31249 AC018529.1-201ENST00000613063 361 ntBASIC12.54□□□□□ -0.4
HOXD3P31249 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXD3P31249 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXD3P31249 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
HOXD3P31249 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.4
HOXD3P31249 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXD3P31249 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
HOXD3P31249 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXD3P31249 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXD3P31249 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
HOXD3P31249 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
HOXD3P31249 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC12.54□□□□□ -0.4
HOXD3P31249 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.4
HOXD3P31249 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXD3P31249 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
HOXD3P31249 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC12.53□□□□□ -0.4
HOXD3P31249 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXD3P31249 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HOXD3P31249 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXD3P31249 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXD3P31249 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXD3P31249 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
HOXD3P31249 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 ME2P1-201ENST00000426028 1970 ntBASIC12.53□□□□□ -0.4
HOXD3P31249 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXD3P31249 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
HOXD3P31249 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXD3P31249 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXD3P31249 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms