Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC19.05■□□□□ 0.64
COL4A5P29400 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.05■□□□□ 0.64
COL4A5P29400 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
COL4A5P29400 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A5P29400 CYP2AB1P-202ENST00000454440 1456 ntBASIC19.05■□□□□ 0.64
COL4A5P29400 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A5P29400 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A5P29400 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A5P29400 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A5P29400 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A5P29400 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A5P29400 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A5P29400 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A5P29400 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC19.05■□□□□ 0.64
COL4A5P29400 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A5P29400 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL4A5P29400 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC19.05■□□□□ 0.64
COL4A5P29400 CYGB-203ENST00000589145 788 ntTSL 3 BASIC19.05■□□□□ 0.64
COL4A5P29400 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.04■□□□□ 0.64
COL4A5P29400 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
COL4A5P29400 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC19.04■□□□□ 0.64
COL4A5P29400 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
COL4A5P29400 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC19.04■□□□□ 0.64
COL4A5P29400 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
COL4A5P29400 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
COL4A5P29400 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC19.04■□□□□ 0.64
COL4A5P29400 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.04■□□□□ 0.64
COL4A5P29400 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC19.04■□□□□ 0.64
COL4A5P29400 GGCT-203ENST00000409144 836 ntTSL 2 BASIC19.04■□□□□ 0.64
COL4A5P29400 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC19.04■□□□□ 0.64
COL4A5P29400 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC19.04■□□□□ 0.64
COL4A5P29400 HOMER2P2-201ENST00000451621 847 ntBASIC19.04■□□□□ 0.64
COL4A5P29400 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC19.04■□□□□ 0.64
COL4A5P29400 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC19.04■□□□□ 0.64
COL4A5P29400 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC19.04■□□□□ 0.64
COL4A5P29400 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 CMC2-214ENST00000565925 640 ntTSL 5 BASIC19.04■□□□□ 0.64
COL4A5P29400 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC19.04■□□□□ 0.64
COL4A5P29400 ECM1P1-201ENST00000604092 1279 ntBASIC19.04■□□□□ 0.64
COL4A5P29400 AC093813.1-201ENST00000605066 256 ntBASIC19.04■□□□□ 0.64
COL4A5P29400 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC19.04■□□□□ 0.64
COL4A5P29400 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A5P29400 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.04■□□□□ 0.64
COL4A5P29400 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL4A5P29400 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A5P29400 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A5P29400 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A5P29400 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A5P29400 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL4A5P29400 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL4A5P29400 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL4A5P29400 RNU1-114P-201ENST00000365297 166 ntBASIC19.03■□□□□ 0.64
COL4A5P29400 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL4A5P29400 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC19.03■□□□□ 0.64
COL4A5P29400 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
COL4A5P29400 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC19.03■□□□□ 0.64
COL4A5P29400 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A5P29400 AP001282.1-201ENST00000531301 1499 ntBASIC19.03■□□□□ 0.64
COL4A5P29400 KRT8P19-201ENST00000551916 1455 ntBASIC19.03■□□□□ 0.64
COL4A5P29400 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A5P29400 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
COL4A5P29400 OS9-205ENST00000413095 1660 ntTSL 2 BASIC19.03■□□□□ 0.64
COL4A5P29400 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A5P29400 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
COL4A5P29400 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A5P29400 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A5P29400 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL4A5P29400 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A5P29400 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A5P29400 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC19.02■□□□□ 0.64
COL4A5P29400 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A5P29400 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A5P29400 HNRNPA1P32-201ENST00000396326 963 ntBASIC19.02■□□□□ 0.64
COL4A5P29400 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC19.02■□□□□ 0.64
COL4A5P29400 KRTAP10-13P-201ENST00000412914 571 ntBASIC19.02■□□□□ 0.64
COL4A5P29400 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC19.02■□□□□ 0.64
COL4A5P29400 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A5P29400 CNN2P10-201ENST00000443067 918 ntBASIC19.02■□□□□ 0.64
COL4A5P29400 HSPB1P2-201ENST00000448722 546 ntBASIC19.02■□□□□ 0.64
COL4A5P29400 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.02■□□□□ 0.64
COL4A5P29400 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.02■□□□□ 0.64
COL4A5P29400 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
COL4A5P29400 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms