Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC4P09017 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC15.69■□□□□ 0.1
HOXC4P09017 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.69■□□□□ 0.1
HOXC4P09017 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC4P09017 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC4P09017 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXC4P09017 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC4P09017 TOMM22P5-201ENST00000416399 439 ntBASIC15.69■□□□□ 0.1
HOXC4P09017 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC4P09017 AL589987.1-201ENST00000453380 819 ntBASIC15.69■□□□□ 0.1
HOXC4P09017 RN7SL692P-201ENST00000464677 288 ntBASIC15.69■□□□□ 0.1
HOXC4P09017 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.69■□□□□ 0.1
HOXC4P09017 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXC4P09017 RBM7-207ENST00000544582 692 ntTSL 3 BASIC15.69■□□□□ 0.1
HOXC4P09017 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXC4P09017 CHCHD2P3-201ENST00000603038 451 ntBASIC15.69■□□□□ 0.1
HOXC4P09017 AC239800.4-201ENST00000603712 296 ntBASIC15.69■□□□□ 0.1
HOXC4P09017 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXC4P09017 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
HOXC4P09017 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
HOXC4P09017 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXC4P09017 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC4P09017 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC4P09017 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC4P09017 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC4P09017 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
HOXC4P09017 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC4P09017 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
HOXC4P09017 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
HOXC4P09017 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 CU639417.3-201ENST00000624240 1404 ntBASIC15.68■□□□□ 0.1
HOXC4P09017 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC15.68■□□□□ 0.1
HOXC4P09017 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 AC099398.1-201ENST00000567919 2776 ntBASIC15.68■□□□□ 0.1
HOXC4P09017 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 PCDHA12-202ENST00000613593 2588 ntBASIC15.68■□□□□ 0.1
HOXC4P09017 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 AC074338.1-201ENST00000416825 156 ntBASIC15.68■□□□□ 0.1
HOXC4P09017 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.68■□□□□ 0.1
HOXC4P09017 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXC4P09017 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXC4P09017 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.68■□□□□ 0.1
HOXC4P09017 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXC4P09017 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC15.68■□□□□ 0.1
HOXC4P09017 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXC4P09017 AC093726.1-201ENST00000608064 963 ntBASIC15.68■□□□□ 0.1
HOXC4P09017 AL391069.4-201ENST00000609583 481 ntBASIC15.68■□□□□ 0.1
HOXC4P09017 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXC4P09017 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXC4P09017 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXC4P09017 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXC4P09017 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXC4P09017 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXC4P09017 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC4P09017 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC4P09017 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC4P09017 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
HOXC4P09017 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC4P09017 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
HOXC4P09017 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC4P09017 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC15.67■□□□□ 0.1
HOXC4P09017 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC4P09017 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC4P09017 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXC4P09017 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC4P09017 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXC4P09017 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC4P09017 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
HOXC4P09017 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC4P09017 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.67■□□□□ 0.1
HOXC4P09017 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXC4P09017 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC4P09017 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC4P09017 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.67■□□□□ 0.1
HOXC4P09017 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC4P09017 COX5BP8-201ENST00000416911 349 ntBASIC15.67■□□□□ 0.1
HOXC4P09017 AC005034.1-201ENST00000426657 489 ntBASIC15.67■□□□□ 0.1
HOXC4P09017 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
HOXC4P09017 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms