Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.69■□□□□ 0.1
CLDN9O95484 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CLDN9O95484 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
CLDN9O95484 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
CLDN9O95484 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
CLDN9O95484 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
CLDN9O95484 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.69■□□□□ 0.1
CLDN9O95484 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.69■□□□□ 0.1
CLDN9O95484 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CLDN9O95484 AC026396.1-201ENST00000419388 421 ntBASIC15.69■□□□□ 0.1
CLDN9O95484 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
CLDN9O95484 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.69■□□□□ 0.1
CLDN9O95484 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
CLDN9O95484 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.69■□□□□ 0.1
CLDN9O95484 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.69■□□□□ 0.1
CLDN9O95484 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC15.69■□□□□ 0.1
CLDN9O95484 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.69■□□□□ 0.1
CLDN9O95484 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
CLDN9O95484 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
CLDN9O95484 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.69■□□□□ 0.1
CLDN9O95484 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.69■□□□□ 0.1
CLDN9O95484 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
CLDN9O95484 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.69■□□□□ 0.1
CLDN9O95484 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.69■□□□□ 0.1
CLDN9O95484 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.69■□□□□ 0.1
CLDN9O95484 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.69■□□□□ 0.1
CLDN9O95484 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.69■□□□□ 0.1
CLDN9O95484 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.69■□□□□ 0.1
CLDN9O95484 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLDN9O95484 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.68■□□□□ 0.1
CLDN9O95484 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CLDN9O95484 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.68■□□□□ 0.1
CLDN9O95484 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
CLDN9O95484 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.68■□□□□ 0.1
CLDN9O95484 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CLDN9O95484 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CLDN9O95484 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.68■□□□□ 0.1
CLDN9O95484 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.68■□□□□ 0.1
CLDN9O95484 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.68■□□□□ 0.1
CLDN9O95484 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.68■□□□□ 0.1
CLDN9O95484 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.68■□□□□ 0.1
CLDN9O95484 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.68■□□□□ 0.1
CLDN9O95484 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
CLDN9O95484 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.68■□□□□ 0.1
CLDN9O95484 AC073389.1-201ENST00000595595 795 ntBASIC15.68■□□□□ 0.1
CLDN9O95484 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.68■□□□□ 0.1
CLDN9O95484 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.68■□□□□ 0.1
CLDN9O95484 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CLDN9O95484 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.68■□□□□ 0.1
CLDN9O95484 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLDN9O95484 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
CLDN9O95484 AKAP8P1-201ENST00000434743 1349 ntBASIC15.68■□□□□ 0.1
CLDN9O95484 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLDN9O95484 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
CLDN9O95484 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLDN9O95484 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
CLDN9O95484 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CLDN9O95484 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLDN9O95484 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLDN9O95484 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLDN9O95484 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms